Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8549g00001 ATGAAGAGTGTCGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGATGGGGATCTTTTCACTGATACGCAACTAAATTCACTGCCATCAGATTGTAGGAGTCATCAGCTGTTTCCTGGTGATCCTGAAATTCGTGCAGCTGGTGATGATTCTAACAGTTTGTCTTCTTCATATGATAATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGCTGATGAAGGTGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATACCCTATCGTAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGGGAGTACCTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCACGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTGAATGAAGAAAAGGGCAGTAGTTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGTTCAGATAATATGACAAGCCAGGATGTTCTATCCCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAATATAGTTTCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCAGGAACATCTGGAACTGCACAGAATGTTCCTAAGACAAATTCTAATGGTCCTGAAAAGTCCAGACCTGTTGATACTTCTAACAAGATGGATAATGGTGTAATCAGTCAGGACCCTCCAGAGTCTATGATACAATGTGAGATGACTCCTGCTAATGGTATGCCTAAAGGATTCATAGGTTCAGGCAGTGATGGAGTAGGAAGTTCAAAATCTCCTTCATTACCACAGTTGTCAAATGTACTTCTGTCACGGGATAGTCTTCCACCCTATTCAGTCTCAGCAGAGACTACGGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAGTGCATATGATGATGTACAGGATTATGTCGAGAACACAAGAAATTCTCGTCCTCCTTTGCCTTCAGGTAATGGGTCCCTTGATAATCCTTTATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTTCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCTCCGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCAGCTATGCCATAATCTAGGATCCAGCTTGAGAAAACTTGCTGTGCCGAATGATTCTTTTTGGAGATCAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGATTCAAAAGTCCACAGAATTGTCAGATTTTTTGTGTTAAACCACTTGCTGTTTCTTCAAGTTCTTGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGTTTTCTAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTGCAAGATAGTTGTTATGATTCGGTTGATGCTGATGCTGCCATTGGACATAATGAGCTTCAGCATCTGAGTTTCTCTTGTAGTATACCGAATTTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGCAGCCGAGACTGCTGATGACATCCAAATGAAAACTAAACTAATGGAAGAAAAGACCCAAGCATTGTATTTCGTACAAGAAATGGGTTGGCTCCTTCACAGAAACCGTGCGAAAGTTAGGCTGGGTCCTGTGGCACCTCTACAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAAGGCACTGTGGATATAGGAGAGCATACATCAGTTGAGTTATCATTGTTAAAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGCTAAAATTTGTGCCAGCTAATACTTCAGATGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTAATAGATTCATATTCAGACCTGATTCTGTTGGGCCTTCTGGATTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGTTCGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCTTATGATCATGCATCCCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGACGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCTGGCACTCTTGTAGATAGTAACATAAGGCAGAAGCAATCAGATGGCCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGGTGCGACATTGTGGGGTATGCCAGCACAAGTTGGCGTACGGTGGTATGAGAAGTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTTCGTATTCCAGCCATTCAGTTGGGAGTCATTGGAATATGGATCCATGTAA 3042 0.4277 MKSVGKRSLEWDLNDWKWDGDLFTDTQLNSLPSDCRSHQLFPGDPEIRAAGDDSNSLSSSYDNVNLAEGRRELEKRRRGVADEGGVEMNDGAGSLNLNLGVQVYPIVEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASLAGTINGRNIVSLLEGSQDLVKAGTSGTAQNVPKTNSNGPEKSRPVDTSNKMDNGVISQDPPESMIQCEMTPANGMPKGFIGSGSDGVGSSKSPSLPQLSNVLLSRDSLPPYSVSAETTVGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDNPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPSEIESYIRPGCIILTVYLRLENSAWEEQLCHNLGSSLRKLAVPNDSFWRSGWIYTRVQHSVAFLYNGQVVLDVPLRFKSPQNCQIFCVKPLAVSSSSCVQFIVKGFNLLFSNTRLLCALEGKYLVQDSCYDSVDADAAIGHNELQHLSFSCSIPNLTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQMKTKLMEEKTQALYFVQEMGWLLHRNRAKVRLGPVAPLQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGTVDIGEHTSVELSLLKMDLLHKAVKRNCRPMVELLLKFVPANTSDGGDSKEKQVNKSPNRFIFRPDSVGPSGLTPLHVAASMHGSDNVLDALTDDPGLVGIEAWKSAQDTTGLTPYDHASLRGYYSYIQLVQTKISNTCKSEHVLNIPGTLVDSNIRQKQSDGHRSSKVSSLQTEKIETTAMVRHCGVCQHKLAYGGMRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYFVFQPFSWESLEYGSM 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8549g00001 1013 ProSiteProfiles Zinc finger SBP-type profile. 126 203 IPR004333 GO:0003677
Vium8549g00001 1013 FunFam Squamosa promoter-binding-like protein 14 120 190 - -
Vium8549g00001 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 895 IPR044817 GO:0003677
Vium8549g00001 1013 MobiDBLite consensus disorder prediction 282 323 - -
Vium8549g00001 1013 MobiDBLite consensus disorder prediction 282 353 - -
Vium8549g00001 1013 SUPERFAMILY SBT domain 127 207 IPR036893 GO:0003677|GO:0005634
Vium8549g00001 1013 Gene3D - 766 930 IPR036770 -
Vium8549g00001 1013 MobiDBLite consensus disorder prediction 193 215 - -
Vium8549g00001 1013 Gene3D - 121 190 IPR036893 GO:0003677|GO:0005634
Vium8549g00001 1013 SUPERFAMILY Ankyrin repeat 782 898 IPR036770 -
Vium8549g00001 1013 Pfam SBP domain 129 202 IPR004333 GO:0003677
Vium8549g00001 1013 MobiDBLite consensus disorder prediction 420 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8549g00001 Vium-Chr8549 7719 18336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8549g00001 5 1012 SBP-box Gene Family AT3G60030 45.190 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium8549g00001 SBP 5.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8549g00001 - - gmx:100776125 1721.06