Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8548g00007 ATGTCCAAACGATTCAAAATCAAATTCAATGTTCCTTCCTTTCAGATATGTCGCTCGAAAGACCTTTCTTCTTTCCCAGGAAACCCCGTTCCTGCCATATACCGTCTCTCTCCCGTTAACCACAACGCACGTCATCCCAACCTTCCTTCTCCCCAATCGTCCAAGATAACGTCGTCCGTTTCGCAGGGGTGCAAAATGTGCCGTGACAAGGAGCCGTACAAAGCCAAATCCAGAAGCCGGAAAGGCACGTCGAGCGTTCCGTCGAGGCGAAGCGATTTTCTGATCGACAACGTCGAGGAAGAGGAAAGCGAGACTCTGATTTCTTGCTTGACGAGTTTCTCCGACGATATTTGTCACGACGAGGCGAGGGACTTGAGAAACAGTAGGCATAGAAGGAAGGCGAGCAGCGTGAAGAAGGTTCAGAGCGTGAGGTTTCGGAGCTCTTCGGAGAATCGAGGAGGAGCGGGAACGACGGAGAAGGTGAAGAAAATGTCGACGACGGTGACGCGGAGCAGTGTTGAGGGGAAGGTGAGGGAGAGCTTTGCGGTGGTGAAGAAGTCGAAGGATCCTTACGAAGACTTCAAGAAATCGATGATGGAGATGATAACGGAGATGGAGATGTCTGAGGCGGAAGACCTGGAACAGCTTTTGCAGTGTTTCTTGGCTTTGAACTCGCGGAGTTACCATGCAGTCATCGTTAGAGTTTTCATGGAGATATGGCAACAAATGTTCGTGTGGAACCCAAAGTCCGTGAAAAATCTCACGGACGTTAAAACTGATACGGAAAAGTAA 792 0.4975 MSKRFKIKFNVPSFQICRSKDLSSFPGNPVPAIYRLSPVNHNARHPNLPSPQSSKITSSVSQGCKMCRDKEPYKAKSRSRKGTSSVPSRRSDFLIDNVEEEESETLISCLTSFSDDICHDEARDLRNSRHRRKASSVKKVQSVRFRSSSENRGGAGTTEKVKKMSTTVTRSSVEGKVRESFAVVKKSKDPYEDFKKSMMEMITEMEMSEAEDLEQLLQCFLALNSRSYHAVIVRVFMEIWQQMFVWNPKSVKNLTDVKTDTEK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8548g00007 263 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 80 244 IPR038933 GO:0045892
Vium8548g00007 263 ProSiteProfiles OVATE domain profile. 183 242 IPR006458 -
Vium8548g00007 263 MobiDBLite consensus disorder prediction 43 64 - -
Vium8548g00007 263 Pfam Transcriptional repressor, ovate 187 244 IPR006458 -
Vium8548g00007 263 MobiDBLite consensus disorder prediction 140 167 - -
Vium8548g00007 263 NCBIfam uncharacterized plant-specific domain TIGR01568 181 243 IPR006458 -
Vium8548g00007 263 MobiDBLite consensus disorder prediction 41 95 - -
Vium8548g00007 263 MobiDBLite consensus disorder prediction 125 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8548g00007 Vium-Chr8548 27543 28592 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium8548g00007 Ovate 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8548g00007 - - gmx:102662518 366.311