Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8547g00003 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTCACCTTTTCAAAGCGCAGAAACGGTTTGCTCAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATCGAGAAGTATCGTCAATGCTGCTTCGACATGTCTCAGATTGGCGACGAAGCTGAACAGCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAGTATGAATCACTCCAACGAACTCAAAGGAATCTTCTGGGAGAAGAACTTGAGCCACTCAGCATGAAAGAACTGCATAGCTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACGCGGAAAGGTGTGCAACCTGGAGCAGATTAACAGAAATTTGGAGTCCAAGAACATAGGTAAATGCACTCATTGTGAAGATTATACTGATCAGTTTGAAGCTGGAGCAGCAACTTCGTTGCGGCTTCAGCAGGAGCAATTTACTTCAAAGGGAAAAGAAGTAGACACGAGGTGTCTTAACGATAATAACGAATGGCAGCTTTGA 666 0.4429 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFDMSQIGDEAEQQSEQCLYQELLVLRVKYESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELRGKVCNLEQINRNLESKNIGKCTHCEDYTDQFEAGAATSLRLQQEQFTSKGKEVDTRCLNDNNEWQL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8547g00003 221 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium8547g00003 221 Coils Coil 125 145 - -
Vium8547g00003 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium8547g00003 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium8547g00003 221 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Vium8547g00003 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium8547g00003 221 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vium8547g00003 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vium8547g00003 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium8547g00003 221 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium8547g00003 221 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vium8547g00003 221 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vium8547g00003 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium8547g00003 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium8547g00003 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8547g00003 Vium-Chr8547 3359 9760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8547g00003 1 192 MADS-box Gene Family AT2G45650 48.438 3.05e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium8547g00003 K-box 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8547g00003 K09264 - gmx:100802197 338.191