Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8547g00002 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTCACCTTTTCAAAGCGCAGAAACGGTTTGCTCAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATCGAGAAGTATCGTCAATGCTGCTTCGACATGTCTCAGATTGGCGACGAAGCTGAACAGCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAGTATGAATCACTCCAACGAACTCAAAGGAATCTTCTGGGAGAAGAACTTGAGCCACTCAGCATGAAAGAACTGCATAGCTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACGCGGAAAGAACATAGGTAAATGCACTCATTGTGAAGATTATACTGATCAGTTTGAAGCTGGAGCAGCAACTTCGTTGCGGCTTCAGCAGGAGCAATTTACTTCAAAGGGAAAAGAAGTAGACACGAGGTGTCTTAACGATAATAACGAATGGCAGCTTTGA 624 0.4423 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFDMSQIGDEAEQQSEQCLYQELLVLRVKYESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELRGKNIGKCTHCEDYTDQFEAGAATSLRLQQEQFTSKGKEVDTRCLNDNNEWQL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8547g00002 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Vium8547g00002 207 Coils Coil 125 145 - -
Vium8547g00002 207 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vium8547g00002 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Vium8547g00002 207 Pfam K-box region 83 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium8547g00002 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium8547g00002 207 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vium8547g00002 207 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vium8547g00002 207 ProSiteProfiles K-box domain profile. 88 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8547g00002 Vium-Chr8547 3359 9760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8547g00002 1 157 MADS-box Gene Family AT1G24260 55.000 1.19e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium8547g00002 K-box 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8547g00002 K09264 - gmx:100802197 313.923