Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00044 ATGTATCCTTCTTCCTCCTCCTCTTCCTCTTCTTCCTCCTCTTCTCAGTCCATGAGCCACGCGCCAACAGGCCTCACGCGCTACGGCTCCGCACCGGGCTCTCTCCTCACCACCACCGTCGATGCTCTCATCGGAGGATCACGCCCCACCCCCACCCCCACCCCCACCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTTCAAAGACCAAACATCGTATCACAACCACGCCCTCGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCACCTAGCATCCACACCCACCGCCCCCACCCCCAATCACAACCACAATGGAGCGGGGTTCACAATCACGCGGGGTTCTCGGCTGAAGTCCCAGCTGAGCTTCACGGGTCACTGCCAAGAATCTCTCTGCGGCGGCGATAACACTAACAATGTGGTGCTTGGCGATCATGCCACCTTCGGAATGGAGCCTTGGGACGGTTCTCATTCTCATTCTAATTCCATCGCCTTTTCCGCTCCTCCAACTAAGCGCTCCAAAAGCTCCAACTCCAGCGAGCAAGACATTCTCCATTGCCTCAACGCCTTGGAATCTCAGTTTAGCCTTCCGCAGACCACTCTCGAAATGGCAACTGTCGAGAAGCTCTTGCACATTCCTGAAGATTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCATCCCCGCAGCATAGCCGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGGTCTGTGAAATAACCTTACCCTTTCCCCCCTCTCTCTCTCTCTCCAATACTTTTCATTCCCATGCCTATTCAGGAATTATCAATTAA 954 0.5356 MYPSSSSSSSSSSSSQSMSHAPTGLTRYGSAPGSLLTTTVDALIGGSRPTPTPTPTPYYSGGDSSDSTFKDQTSYHNHALGSALLRQKSSPAGFLSHLASTPTAPTPNHNHNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNTNNVVLGDHATFGMEPWDGSHSHSNSIAFSAPPTKRSKSSNSSEQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQVCEITLPFPPSLSLSNTFHSHAYSGIIN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00044 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 291 - -
Vium8540g00044 317 MobiDBLite consensus disorder prediction 57 73 - -
Vium8540g00044 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 293 IPR036638 GO:0046983
Vium8540g00044 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 284 IPR011598 GO:0046983
Vium8540g00044 317 Pfam Helix-loop-helix DNA-binding domain 239 285 IPR011598 GO:0046983
Vium8540g00044 317 MobiDBLite consensus disorder prediction 1 45 - -
Vium8540g00044 317 SMART finulus 240 290 IPR011598 GO:0046983
Vium8540g00044 317 MobiDBLite consensus disorder prediction 164 186 - -
Vium8540g00044 317 MobiDBLite consensus disorder prediction 1 73 - -
Vium8540g00044 317 CDD bHLH_AtbHLH_like 239 290 IPR045239 -
Vium8540g00044 317 Gene3D - 231 293 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00044 Vium-Chr8540 173577 175807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00044 24 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 42.730 3.68e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium8540g00044 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00044 - - vum:124847148 618.616