Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00038 ATGGATCATCGCAAGAGGGGGAGGTCTGAAGCTGCCTTCAATGTCAATGGCGCCGCCAAGAAATTCAGACCAGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGGAACGATCCTGGTATTCCTCATGTTGGTAGAAATCCTATTCCACCATCCTTCCCTGATGGGTCTTCCCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACCGCTGAGGGTTGCAAATTTGGTGACAAGTGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACGGCCCCATCATATGAAGATCCCCGTGTTATGGGACAAATGCCAAGCAGCAGGATCGGTGGACGTCTGGAGCCCCCACTTCCAGCTCATGGCGCAGCTGCCAGCTTTGGAGCCTCGGCCACTGCAAAAATTAGTATCAATGCCGCACTAGCTGGAGCAGTGATTGGAAAAGGAGGCGTCAACTCAAAGCAAATTTGTCGTGTAACAGGAGCTAAACTTGCCGTAAGGGATCATGACACGGATTCTAACCTCAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAGCAAGCCAGTGCAATGGTACACGAACTTATTTTAAATCTTAGTTCTGCCTCTGGGCCTCCAATGAAGACCTTTACTACACAGACTTCCGCCCCGGCAAGCAACTTCAAGACCAAGCTCTGCGAAAACTTCGCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCTCATGGAACTGATGATTTGCGCAAGACTGGAATATGA 897 0.4894 MDHRKRGRSEAAFNVNGAAKKFRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGNDPGIPHVGRNPIPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRIGGRLEPPLPAHGAAASFGASATAKISINAALAGAVIGKGGVNSKQICRVTGAKLAVRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSSASGPPMKTFTTQTSAPASNFKTKLCENFAKGSCTFGERCHFAHGTDDLRKTGI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00038 298 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 163 243 IPR036612 GO:0003723
Vium8540g00038 298 Gene3D K Homology domain, type 1 168 259 IPR036612 GO:0003723
Vium8540g00038 298 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Vium8540g00038 298 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Vium8540g00038 298 Pfam KH domain 175 237 IPR004088 GO:0003723
Vium8540g00038 298 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Vium8540g00038 298 SUPERFAMILY CCCH zinc finger 263 294 IPR036855 GO:0046872
Vium8540g00038 298 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vium8540g00038 298 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Vium8540g00038 298 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Vium8540g00038 298 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vium8540g00038 298 CDD KH-I_AtC3H36_like 176 240 - -
Vium8540g00038 298 FunFam Zinc finger CCCH domain-containing protein 259 295 - -
Vium8540g00038 298 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vium8540g00038 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 289 IPR000571 GO:0046872
Vium8540g00038 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Vium8540g00038 298 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Vium8540g00038 298 PANTHER CCCH ZINC FINGER/TIS11-RELATED 13 149 IPR045877 GO:0003729
Vium8540g00038 298 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vium8540g00038 298 SMART kh_6 171 241 IPR004087 GO:0003676
Vium8540g00038 298 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Vium8540g00038 298 Gene3D - 95 132 - -
Vium8540g00038 298 Gene3D - 260 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00038 Vium-Chr8540 111106 116657 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium8540g00038 KH_1 2.3e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00038 - - gmx:100818781 556.599