Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00036 ATGCAAGAAGAGAATAACGCAGCAGGGCCGTTGCTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGAAACTGGGGTGCCCAGATATATGCAAACCACCAGAGAATCTGGTTGGGGACTTTCAAATCGGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAACGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAAGAGCCTCAGTTTCAAAGCCATTACAGCACAGAAACAATGCTGAGCATGATTAGAGATGGCACCTACCCTTCACGCTTTGCCACATTTCTCAGCACTCGTCAACAAGGTGGTGTTCTCAAGCACGTAACTTTGAAGGATGACGGCAAGGAGCAGCTTTGCTGCACCCAGCTTTTTCAGAAGGAGTTGACACCGAGTGATGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAGCATGCAGTCACATATTTTCCTAACGTGTGTGACGGCGGCGCAGAATCGCATGAAGAAAATGTGAGTGCTGACGTTGAGGTTGCGTTTTACGACAGGCTCATGAGACAGTGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAAAGCTACGTGTTCACGAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCATGTGTGAACCTGTGGATTGCAGAAAAGGAGGAGAGGGAGAAGCTTTTGGATTGATCGATGTAATCTATAGTTCAGATGAAGACACCAAAGATGAACACACTGTAAAGGATTTGAATGCAGAAAAGGGTTTGAAACTCTTTGGAGTTTTGATCAAATAG 843 0.4603 MQEENNAAGPLLQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRNGDSHRNFPWNDQTVQEPQFQSHYSTETMLSMIRDGTYPSRFATFLSTRQQGGVLKHVTLKDDGKEQLCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVCDGGAESHEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDCRKGGEGEAFGLIDVIYSSDEDTKDEHTVKDLNAEKGLKLFGVLIK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00036 280 FunFam AP2 domain-containing protein RAP2.8 13 70 - -
Vium8540g00036 280 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 277 IPR044800 GO:0003700
Vium8540g00036 280 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Vium8540g00036 280 CDD B3_DNA 133 229 IPR003340 GO:0003677
Vium8540g00036 280 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Vium8540g00036 280 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Vium8540g00036 280 ProSiteProfiles AP2/ERF domain profile. 14 69 IPR001471 GO:0003700|GO:0006355
Vium8540g00036 280 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Vium8540g00036 280 SMART rav1_2 14 75 IPR001471 GO:0003700|GO:0006355
Vium8540g00036 280 SUPERFAMILY DNA-binding pseudobarrel domain 132 231 IPR015300 -
Vium8540g00036 280 Gene3D - 130 242 IPR015300 -
Vium8540g00036 280 SMART B3_2 134 238 IPR003340 GO:0003677
Vium8540g00036 280 Pfam B3 DNA binding domain 134 228 IPR003340 GO:0003677
Vium8540g00036 280 ProSiteProfiles B3 DNA-binding domain profile. 134 253 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00036 Vium-Chr8540 101660 102555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00036 14 265 RAV Transcription Factor Family AT1G51120 56.364 4.55e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Vium8540g00036 B3 6.2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00036 K09287 - gmx:102660503 409.838