LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8540g00035	ATGAAACGTACGCGCAGAGGCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCGAATGCCGACGGCGAGGGAGTTTCCAAGAAGAAAGCGGTGCGAGAGCAGAACCCCGCTACTCGCAGGGTCATACGCTCCCAGTTCCTCAAACTCAAGACTCTCATCGGCGAGAAAAGAGATGATTTGATGAACACGGAGTCCGAGAAATTCCACAACATTTTGGAAGAGTTCGACAAGTTACACGACCAAGTTGAGAAGCCAAGAGAGCAGGTTGCAGATGCAGAGGCACTGTTGGATCTGACGCGCACTCTGGTAGGATCTGTTAGGAGTTTGGCGAACGAGGGTGTCACCCCTTCACAATTTGTTTCCTCTTTGCTCATACGCTATGGCCAAGGTCAAGGCCAAGATTCAATCGATTGGCAGAAACTTGGCATTGCGGTGTCCCCGATATTCCTCTCCGTTCACGGCTCTACTACCATGCTTGGACCTATGGACAACGAAATCAAGAAACGAAGAATCGGAGTGCGCAAACAACGTGATGCTCGCCCTGTCGCAACTACTAGACCTGAACAGCTTGATGAGGCTGGTGCGGTGGAGAAAACTGATACTGACAAAAACATGGCAACGATGTTTAACATCTTGAGGAGGACAAAACGTGTCCGACTTGAAAATTTAATTATCAACAGAAAGTCTTTTGCTCAGACCGTGGAAAATTTGTTTTCTCTGTCATTCCTTGTAAAAGATGGTCGTGCTGAGATCAGTCTCGATGAAAATCGTTTGCACTATGTTTCTCCTAAAAATGCTCCAGCTGCTAACTTGGTATCATCAAAAGAAGTTTCTTATAGTCATTTTGTATTCAGATATGATTACCAAGATTGGAAGCTTATGAAAGATGTAGTGCCGGAAGGGGAAGAGTTGATGCCAAATCGGGTTCAATGTGCTACCGCTGCTTACCCTCAGGAAAGGATGGGTGTGGACGATTCTCAACCTGCTTTGGCTTTAACACCTATCAGGAAGCTATCACGGAATCGAGGACTGGTTGTACAGGAGGAAAGTGTTGTAGAAGAAACTCCTGAATGTGATGAAGAAAATGTTTCCAGAGAAGCGGCTATTCGGAGGTGTAAGCGTAAACTTGATGAAGAAATAGCACATTAG	1158	0.4672	MKRTRRGDADADADADADADANADGEGVSKKKAVREQNPATRRVIRSQFLKLKTLIGEKRDDLMNTESEKFHNILEEFDKLHDQVEKPREQVADAEALLDLTRTLVGSVRSLANEGVTPSQFVSSLLIRYGQGQGQDSIDWQKLGIAVSPIFLSVHGSTTMLGPMDNEIKKRRIGVRKQRDARPVATTRPEQLDEAGAVEKTDTDKNMATMFNILRRTKRVRLENLIINRKSFAQTVENLFSLSFLVKDGRAEISLDENRLHYVSPKNAPAANLVSSKEVSYSHFVFRYDYQDWKLMKDVVPEGEELMPNRVQCATAAYPQERMGVDDSQPALALTPIRKLSRNRGLVVQEESVVEETPECDEENVSREAAIRRCKRKLDEEIAH	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8540g00035	385	PANTHER	UNCHARACTERIZED	3	364	IPR027786	GO:0005634\|GO:0006281\|GO:0030915
	Vium8540g00035	385	MobiDBLite	consensus disorder prediction	1	39	-	-
	Vium8540g00035	385	MobiDBLite	consensus disorder prediction	23	39	-	-
	Vium8540g00035	385	Pfam	Nse4 C-terminal	221	307	IPR014854	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8540g00035	Vium-Chr8540	98549	101076	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8540g00035	42	379	Non-SMC Element family	AT1G51130	50.862	5.90e-117	344

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8540g00035	K22825		-	gmx:100792117	567