Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00034 ATGATGGAATACGAGGTTGTGAGTATGTTGGCGTTGGGCATGTTGGTGTTAGGCATGTTGGTGTTAGGCATGTTGGTGAGGATGAAGGTTATGGAAGGAAGGCAGCAGCTTCCACCAGGACCAAGATGTTGGCCAGTGGTTGGTAACATGTTCCAGCTAGGGTGGTCACCACACGAGTCCTTTGCAAAACTTGCTCATAAACATGGTCCAGTCATGAGGCTTTGGCTAGGGTCGATGTGCACAGTGGTTATCTCGTCAAGCGAAGTGGCTGGTGAGATGTTCAAAAAGCATGACGCGGTTCTTGCAGGGAGGAAGATTTACGAGGCCATGAGAGGGGAGCATGGGACTGAGGGTTCCCTTGTAACTTCTCAGTACAACTCACACTGGCGCATGCTGAAGCGCTTGTGCACCTCTGAGTTCTTTGTTACCAGTCGCTTAGATGCGATGCGGGGTGTTCGTGAAAAATGTATACACCGCATGCTGCGTTTGATTGAAGAAGCTGGTGAATCAGGCACACGTGCGGTTGATGTTGGGAGGTTTTTTTTCTTGATGGATTTTAACCTTATTGGGAACCTCGTATTCTCAAAGGACTTGTTGGAGTCTGAGACTGAGAGAGGGGATAGATTTTATTACCATGCACTTAAGGTTATGGAGTATGCTGGGAAGCCCAACATGGCAGATTTCTTGCCATTTCTCAAGTGGTTTGATCCTCAGGGTATAAGGAGGAAGACACAGTTCCACGTCAACCAAGCCTTTGACATTGCAGGCTCGTTCATCAAAGAAAGGATGGAAAAGAGTCACGGTGGATCCAAGGAAACAAAAGATTACTTGGATGTCTTGTTGGCTTTTCGTGGGGATTCTACCACTCAGTCCTATACTTTTTCTTCAAGAACTATTAACGTTATTATCTTTGAAATGTTCACTGCAGGAACAGACACGACGACGAGCACAATCGAATGGGCAATGGCAGAGCTTCTGCACAACCCAAGAACGCTAAAGAAAGTGCAGATAGAGTTGAGGAACAAAATAGGGTCCGGTAGGAACATGGAAGAAAAGGACATGGAGAATCTTCCCTACCTGCAAGCGGTGATCAAGGAGACACTGAGACTTCACCCACCTCTTCCTCTTATGGTTCCTCATATGGCTATGGAGTCCTGCAACATGCTTGGCTACGATATTCCCAAAGAGTCACAGATTTTAGTGAATGTTTGGGCAATAGGAAGGGACTGCAAAGTGTGGGATGCTCCCTTATTGTTCTGGCCTGAAAGATTTCTGGAGCCAAACACCGTGGTGGACTACAAAGGGCGTCATTTTGAGTTTATACCCTTTGGTTCGGGTCGAAGAATGTGCCCAGCCATGCCACTCGCCTCTCGTGTGCTTACCTTGGCATTGGGCTCCCTCTTGCATTCCTTTGACTGGGTTTTGCCAGATGGCCTCAAACCAGAGGAGATGGACATGACTGAGGGACTGGGAATAACGCTGAGGAAAGCCATTCCTTTGAAAGCCATACCAGTGCCTTATAGAGGAGCTACTACAGCAAACGAATAA 1548 0.4742 MMEYEVVSMLALGMLVLGMLVLGMLVRMKVMEGRQQLPPGPRCWPVVGNMFQLGWSPHESFAKLAHKHGPVMRLWLGSMCTVVISSSEVAGEMFKKHDAVLAGRKIYEAMRGEHGTEGSLVTSQYNSHWRMLKRLCTSEFFVTSRLDAMRGVREKCIHRMLRLIEEAGESGTRAVDVGRFFFLMDFNLIGNLVFSKDLLESETERGDRFYYHALKVMEYAGKPNMADFLPFLKWFDPQGIRRKTQFHVNQAFDIAGSFIKERMEKSHGGSKETKDYLDVLLAFRGDSTTQSYTFSSRTINVIIFEMFTAGTDTTTSTIEWAMAELLHNPRTLKKVQIELRNKIGSGRNMEEKDMENLPYLQAVIKETLRLHPPLPLMVPHMAMESCNMLGYDIPKESQILVNVWAIGRDCKVWDAPLLFWPERFLEPNTVVDYKGRHFEFIPFGSGRRMCPAMPLASRVLTLALGSLLHSFDWVLPDGLKPEEMDMTEGLGITLRKAIPLKAIPVPYRGATTANE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00034 515 CDD CYP76-like 65 504 - -
Vium8540g00034 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Vium8540g00034 515 Gene3D Cytochrome P450 27 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 17 506 - -
Vium8540g00034 515 Pfam Cytochrome P450 38 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 SUPERFAMILY Cytochrome P450 38 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8540g00034 515 FunFam Cytochrome P450 76C4 29 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00034 Vium-Chr8540 96255 98143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00034 34 510 Cytochrome P450 AT3G52970 62.249 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00034 - - gmx:100778988 833.943