Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00021 ATGGTTTCTTCAAATTCCAGTTCCAATGCATCTTTGCTTTGGTTCCACCCTCAAGCAAACATGAGTGCTACCAATGTTGTTATTTGTGTGATCACTGTTATCCTTCTTCCTTTGTTGCAACTCTCACTCGTCTCTGCCTCTGCTAAGACTAATGTTAGCATCGGTGATACCCTTATTGCAGGTAATGAGGGTGCTCAATGGCTCTCTCCATCAGGAGAGTTTGCATTTGGATTTCATCAGCCTGAGAGTTATTCTCTTTTCTTGGTTGCCATAAGATATCAAAACATACCTCGTACCTCTTTCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGTTCGACACTAGAGCTCAGTAAAAGCAGAGGACTTGTGCTGAAAAACCCTCAGGGTGTTGAGCTATGGACATCGCAGCTCATATCAGGTACGATTTCCCATGGACTAATGAATGACACAGGCAACTTCCAGCTTCTAGGTGAGAATTCACAGATTTTGTGGGACAGTTTCAGCAATCCAACCGATACCTTGGTGCCAAATCAAATCATGGAGGTTAAAGGCCCGCTTTCATCGCGTCAGAAAGAGACCAACTACACACGAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAACCGTACTTATGAGGCTCACTACATCAGTAACACTTATGATTCCAACAATACAACGAACTCCGGTTTCCGAGTGATGTTTGATGATTCAGGATTTTATGTATTGAAGAGGAGCTATGAGAGGGTTTATATTACCAATCCAAATGATATGCTCTCTACTGATTCCTATTACTATAGAGCAACCATAAATTTTGATGGAACTTTCACCATATCCCGTTACCCGAAAAGTGGAGCTTCAAATCCAAGCTGGACAGTTATAAAGACATTGCCAGAAGACATTTGCATGAATTTGGAATCAATCACTGCTGGTAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTGGAAGCTGATCAAAGACCTAAGTGCACATGCCCAGAAGGCTATTCTCTTCTTGATTCAACGGATGAGTACGGCAGCTGCAGACCAAATTTGGAACTCGGTTGTGGAGGAAGTGGACAAAGCTTGCAGGAAGATATGTACTTCATGAAGGAAATGGCAAATACTGATTGGCCTAAATCAGATTTTGAGTTGTATAAACCTTACAACTCAGAGGACTGCAAGAATTCTTGCTTGCGAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAACTGCCTCTCTCAAATGGAAGACGGGGTGGAAAAGTTGAGGCATCTGCTTTCATTAAGTTGAGGAAAAATGATGCCTTGTCAGATAGTCCTTCAGATTCATTCATAAAAGAGAAGGAAAATGAAAAGGATCAAGACAGTTTGGTAACTGTGATATCAGTCCTTCTAGGGGGTTCTGTCTTTTTGAATCTCATGGTGATCACTGCAGTATGTATTGGTTTACCCTTATACTACAAGAAGAGAAGTTCTACAAATAATACTGTTGCAGAGAGCAATTTGCGCAGTTTCAGCTTTAGAGAGCTTGTGCAAGCAACAGATAACTTCAGAGAAGAATTGGGAAGGGGATCTTGTGGCATTGTCTTTAAAGGAAAAACAGATTTGGCCACTATTGCTGTCAAAAAACTGGACAAGTTGCTAAAAGACAGCGATAAGGAATTCAAAACAGAAGTGAATGTAATTGGCCAAACTCATCACAAAAACTTGGTTCGCCTGATTGGATATTGTGATGAGCTAGAACACCGGATTCTGGTGTATGAGTTTATGAGCAATGGCACTTTGGCAAATTTCCTTTTCGAAGATTTCAAACCTAGCTGGAACCAAAGAGTCCAGATTGCCTTTGGGATATCGAGAGGGCTGGTTTACTTGCACGAGGAATGCTTCACCCAGATCATCCATTGTGACATAAAGCCTCAAAATATACTTCTTGATGAGCATTACAACGCAAGAATATCAGACTTTGGATTGTCAAAGCTACTAATGATTAATCAAAGCCGCACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCACCAGACTGGTTCAGGAGTGCGCCGATCACAACCAAGGTTGATGTCTACAGTTTTGGTGTGCTGCTTCTGGAGATCATTTGCTGCAGGAGAAATGTAGATGATAAGTTGGAGATGGATGAGAAGGGCATTTTAACTGACTGGGCTTATGACTGCTATAGGGATGGAAGAATAGACATTCTGGTTACAAACGACGATGAGGCTATCAATGACATAGATAAGTTGGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTCAGGCCAACAATGAAGAAGGTGATGCTGATGCTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTGCCCTTATGCCTCTGTTACTGTTAGCTGCGGCTGA 2487 0.4214 MVSSNSSSNASLLWFHPQANMSATNVVICVITVILLPLLQLSLVSASAKTNVSIGDTLIAGNEGAQWLSPSGEFAFGFHQPESYSLFLVAIRYQNIPRTSFIWYANGDNPAPKGSTLELSKSRGLVLKNPQGVELWTSQLISGTISHGLMNDTGNFQLLGENSQILWDSFSNPTDTLVPNQIMEVKGPLSSRQKETNYTRGRFQFRLLPDGNAVLNPINLPTNRTYEAHYISNTYDSNNTTNSGFRVMFDDSGFYVLKRSYERVYITNPNDMLSTDSYYYRATINFDGTFTISRYPKSGASNPSWTVIKTLPEDICMNLESITAGSGVCGFNSICTLEADQRPKCTCPEGYSLLDSTDEYGSCRPNLELGCGGSGQSLQEDMYFMKEMANTDWPKSDFELYKPYNSEDCKNSCLRDCLCAVSIFRDDSCWKKKLPLSNGRRGGKVEASAFIKLRKNDALSDSPSDSFIKEKENEKDQDSLVTVISVLLGGSVFLNLMVITAVCIGLPLYYKKRSSTNNTVAESNLRSFSFRELVQATDNFREELGRGSCGIVFKGKTDLATIAVKKLDKLLKDSDKEFKTEVNVIGQTHHKNLVRLIGYCDELEHRILVYEFMSNGTLANFLFEDFKPSWNQRVQIAFGISRGLVYLHEECFTQIIHCDIKPQNILLDEHYNARISDFGLSKLLMINQSRTETGIRGTKGYVAPDWFRSAPITTKVDVYSFGVLLLEIICCRRNVDDKLEMDEKGILTDWAYDCYRDGRIDILVTNDDEAINDIDKLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYASVTVSCG 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00021 828 ProSiteProfiles Bulb-type lectin domain profile. 43 171 IPR001480 -
Vium8540g00021 828 Gene3D - 48 172 IPR036426 -
Vium8540g00021 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vium8540g00021 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 613 812 - -
Vium8540g00021 828 Gene3D - 173 299 IPR036426 -
Vium8540g00021 828 Pfam Protein kinase domain 541 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8540g00021 828 FunFam Serine/threonine-protein kinase 174 319 - -
Vium8540g00021 828 PIRSF SRK 20 827 IPR024171 GO:0004674
Vium8540g00021 828 SMART serkin_6 538 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8540g00021 828 SUPERFAMILY Protein kinase-like (PK-like) 516 806 IPR011009 -
Vium8540g00021 828 Gene3D Transferase(Phosphotransferase) domain 1 613 812 - -
Vium8540g00021 828 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 58 818 - -
Vium8540g00021 828 Gene3D Phosphorylase Kinase; domain 1 505 612 - -
Vium8540g00021 828 Pfam D-mannose binding lectin 101 185 IPR001480 -
Vium8540g00021 828 CDD STKc_IRAK 544 808 - -
Vium8540g00021 828 FunFam S-receptor-like serine/threonine-protein kinase 509 612 - -
Vium8540g00021 828 ProSiteProfiles Protein kinase domain profile. 538 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8540g00021 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 96 216 IPR036426 -
Vium8540g00021 828 SMART blect_4 57 173 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00021 Vium-Chr8540 69517 72003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00021 520 807 Receptor kinase-like Gene Family AT1G60800 41.892 7.86e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium8540g00021 Pkinase 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00021 - - vra:106771503 1597.41