Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00018 ATGCCGAGCTTCAATCCACAACTGCCCAATTCCAATGCATGCTATACAGAGGGAAGCACAATTGATTCTTTTCGTCTGTCTGACTTTGATCAATCAGTTGGATATCGCATAGAGGATGCTGTTGCCTTGAGTGGAAACTCAATTTTAGACTCACTTAAAGTAAGTAGCCAGACAGTTTCTCGAGGTGTTATTCAACTTGGTTCCTTTGATAAGTTGCCAACTTCACTTGACAAAAGCATATTAACAAACCAAACAGAGCAGCAAAGCTTGCAATTCCAAAAGGTTCACACATCAAATTTGGTTACTGGTGATACAGAACACCTGGAAGAGTTTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGCTGACACCGACGATAAGAATCCACAGTTTGATAGAAATCAAGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGACTGAGAAAGAAAGCTTATGTTCAACAGCTGGAAAGTAGTCGTTTAAAGCTGACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTTATATCAAGTTCAGGTGATCAAGCGCATTCGATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGATCAGCTGTAAATTCTCACGCAGGTGATACAGAACTCTGCATGATTATCGATGGTGTAATGGCACATTATGATGAAATATTTAGACTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCCGAGAGGTGTTTCCTATGGCTTGGAGGTTTTCGGTCTTCTGAACTCCTCAAGCTGCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATCACAAACTTGCAGCAATCTTCCCAACAGGCTGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGATAATCTGCGCCAGCAAACACTGCAACAAATTCATCGGATACTGACAACTCGGCAATCTGCTCGTGCACTGCTTGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCTCGCCCAAGAGACTGA 1335 0.4517 MPSFNPQLPNSNACYTEGSTIDSFRLSDFDQSVGYRIEDAVALSGNSILDSLKVSSQTVSRGVIQLGSFDKLPTSLDKSILTNQTEQQSLQFQKVHTSNLVTGDTEHLEEFAMADASPRTDISTDADTDDKNPQFDRNQALAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMAFDAEYARWLEEQNRQINELRSAVNSHAGDTELCMIIDGVMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00018 444 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 162 177 IPR004827 GO:0003700|GO:0006355
Vium8540g00018 444 SUPERFAMILY Leucine zipper domain 159 202 IPR046347 GO:0003700|GO:0006355
Vium8540g00018 444 CDD bZIP_HBP1b-like 159 211 - -
Vium8540g00018 444 Pfam bZIP transcription factor 159 199 IPR004827 GO:0003700|GO:0006355
Vium8540g00018 444 FunFam BZIP family transcription factor 158 207 - -
Vium8540g00018 444 PANTHER TRANSCRIPTION FACTOR TGA9 95 443 - -
Vium8540g00018 444 Coils Coil 178 205 - -
Vium8540g00018 444 ProSiteProfiles DOG1 domain profile. 224 441 IPR025422 GO:0006351|GO:0043565
Vium8540g00018 444 Coils Coil 235 255 - -
Vium8540g00018 444 SMART brlzneu 155 218 IPR004827 GO:0003700|GO:0006355
Vium8540g00018 444 Pfam Seed dormancy control 241 316 IPR025422 GO:0006351|GO:0043565
Vium8540g00018 444 MobiDBLite consensus disorder prediction 115 134 - -
Vium8540g00018 444 MobiDBLite consensus disorder prediction 141 161 - -
Vium8540g00018 444 Gene3D - 158 207 - -
Vium8540g00018 444 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 157 201 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00018 Vium-Chr8540 57273 63752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00018 113 444 bZIP Transcription Factor Family AT3G12250 81.024 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium8540g00018 DOG1 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00018 K14431 - gmx:100816123 724.931