Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00017 ATGCCGAGCTTCAATCCACAACTGCCCAATTCCAATGCATGCTATACAGAGGGAAGCACAATTGATTCTTTTCGTCTGTCTGACTTTGATCAATCAGTTGGATATCGCATAGAGGATGCTGTTGCCTTGAGTGGAAACTCAATTTTAGACTCACTTAAAGTAAGTAGCCAGACAGTTTCTCGAGGTGTTATTCAACTTGGTTCCTTTGATAAGTTGCCAACTTCACTTGACAAAAGCATATTAACAAACCAAACAGAGCAGCAAAGCTTGCAATTCCAAAAGGTTCACACATCAAATTTGGTTACTGGTGATACAGAACACCTGGAAGAGTTTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGCTGACACCGACGATAAGAATCCACAGTTTGATAGAAATCAAGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGACTGAGAAAGAAAGCTTATGTTCAACAGCTGGAAAGTAGTCGTTTAAAGCTGACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTTATATCAAGTTCAGGTGATCAAGCGCATTCGATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGATCAGCTGTAAATTCTCACGCAGCCGAGAGGTGTTTCCTATGGCTTGGAGGTTTTCGGTCTTCTGAACTCCTCAAGCTGCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATCACAAACTTGCAGCAATCTTCCCAACAGGCTGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGATAATCTGCGCCAGCAAACACTGCAACAAATTCATCGGATACTGACAACTCGGCAATCTGCTCGTGCACTGCTTGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCTCGCCCAAGAGACTGA 1209 0.4557 MPSFNPQLPNSNACYTEGSTIDSFRLSDFDQSVGYRIEDAVALSGNSILDSLKVSSQTVSRGVIQLGSFDKLPTSLDKSILTNQTEQQSLQFQKVHTSNLVTGDTEHLEEFAMADASPRTDISTDADTDDKNPQFDRNQALAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMAFDAEYARWLEEQNRQINELRSAVNSHAAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00017 402 SUPERFAMILY Leucine zipper domain 159 202 IPR046347 GO:0003700|GO:0006355
Vium8540g00017 402 FunFam BZIP family transcription factor 158 207 - -
Vium8540g00017 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 162 177 IPR004827 GO:0003700|GO:0006355
Vium8540g00017 402 Pfam bZIP transcription factor 159 199 IPR004827 GO:0003700|GO:0006355
Vium8540g00017 402 ProSiteProfiles DOG1 domain profile. 174 399 IPR025422 GO:0006351|GO:0043565
Vium8540g00017 402 Coils Coil 178 205 - -
Vium8540g00017 402 Gene3D - 158 207 - -
Vium8540g00017 402 Coils Coil 235 255 - -
Vium8540g00017 402 SMART brlzneu 155 218 IPR004827 GO:0003700|GO:0006355
Vium8540g00017 402 Pfam Seed dormancy control 226 274 IPR025422 GO:0006351|GO:0043565
Vium8540g00017 402 PANTHER TRANSCRIPTION FACTOR TGA9 254 401 - -
Vium8540g00017 402 MobiDBLite consensus disorder prediction 115 134 - -
Vium8540g00017 402 MobiDBLite consensus disorder prediction 141 161 - -
Vium8540g00017 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 157 201 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00017 Vium-Chr8540 57273 63752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00017 113 402 bZIP Transcription Factor Family AT3G12250 71.988 4.90e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium8540g00017 DOG1 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00017 K14431 - gmx:100816123 624.78