Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00016 ATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGATCAGCTGTAAATTCTCACGCAGGTGATACAGAACTCTGCATGATTATCGATGGTGTAATGGCACATTATGATGAAATATTTAGACTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCCGAGAGGTGTTTCCTATGGCTTGGAGGTTTTCGGTCTTCTGAACTCCTCAAGCTGCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATCACAAACTTGCAGCAATCTTCCCAACAGGCTGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGATAATCTGCGCCAGCAAACACTGCAACAAATTCATCGGATACTGACAACTCGGCAATCTGCTCGTGCACTGCTTGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCTCGCCCAAGAGACTGA 681 0.4684 MSGNGAMAFDAEYARWLEEQNRQINELRSAVNSHAGDTELCMIIDGVMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00016 226 ProSiteProfiles DOG1 domain profile. 6 223 IPR025422 GO:0006351|GO:0043565
Vium8540g00016 226 Pfam Seed dormancy control 23 98 IPR025422 GO:0006351|GO:0043565
Vium8540g00016 226 PANTHER TRANSCRIPTION FACTOR TGA9 4 225 - -
Vium8540g00016 226 Coils Coil 17 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00016 Vium-Chr8540 54532 57010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00016 3 226 bZIP Transcription Factor Family AT5G06950 82.143 1.06e-131 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00016 K14431 - gmx:100816123 397.897