Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00015 ATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGATCAGCTGTAAATTCTCACGCAGCCGAGAGGTGTTTCCTATGGCTTGGAGGTTTTCGGTCTTCTGAACTCCTCAAGCTGCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATCACAAACTTGCAGCAATCTTCCCAACAGGCTGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGATAATCTGCGCCAGCAAACACTGCAACAAATTCATCGGATACTGACAACTCGGCAATCTGCTCGTGCACTGCTTGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCTCGCCCAAGAGACTGA 555 0.4811 MSGNGAMAFDAEYARWLEEQNRQINELRSAVNSHAAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00015 184 ProSiteProfiles DOG1 domain profile. 1 181 IPR025422 GO:0006351|GO:0043565
Vium8540g00015 184 Pfam Seed dormancy control 30 56 IPR025422 GO:0006351|GO:0043565
Vium8540g00015 184 Coils Coil 17 37 - -
Vium8540g00015 184 PANTHER TRANSCRIPTION FACTOR TGA9 4 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00015 Vium-Chr8540 54532 57026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00015 3 184 bZIP Transcription Factor Family AT5G06950 68.304 1.14e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00015 K14431 - gmx:100816123 297.745