Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8540g00001 ATGCGTCGGTGGCTTTGTTGCACTTGTCAGGTGGAGGAGTCTTACCCATCGAACGAGAATGAACACCTGAAAAGCCCAAGGAATTACGGAGACAACAACCAAAAAGGCTCAAAGGTGTCAGCTCCTGTCAAGCCTGAAACACAAAAGTTAACNCAAGGTGCACAACCAGGGCCAACACTTGATTGGATACAGCGAGTTAGAATCGCAGTTGATGCAGCCAGGGGATTGGAGTATTTACATGAGAAAGTTCAGCCACCAATTATACACAGGGATATCAGATCAAGTAATGTGCTAATATTTGAAGACTACAAGGCTAAGATAGCTGACTTTAACCTTTCCAATCAGGCCCCTGACATGGCTGCCCGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGTTGACTCAAAAAAGCGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTCACAGGAAGAAAACCTGTTGACCACACCATGCCTCGAGGACAGCAGAGTCTTGTCACATGGGCTACTCCACGATTGAGTGAAGATAAAGTGAAACAGTGCGTTGACCCAAAACTGAAGGGAGAATATCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCGAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGACTCCTGCTCCTGCTCCAGAAAGTTGA 753 0.4568 MRRWLCCTCQVEESYPSNENEHLKSPRNYGDNNQKGSKVSAPVKPETQKLTQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKTPAPAPES 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8540g00001 250 Gene3D Transferase(Phosphotransferase) domain 1 48 246 - -
Vium8540g00001 250 ProSitePatterns Tyrosine protein kinases specific active-site signature. 87 99 IPR008266 GO:0004672|GO:0006468
Vium8540g00001 250 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 48 245 - -
Vium8540g00001 250 Pfam Protein tyrosine and serine/threonine kinase 58 237 IPR001245 GO:0004672|GO:0006468
Vium8540g00001 250 SUPERFAMILY Protein kinase-like (PK-like) 55 240 IPR011009 -
Vium8540g00001 250 SMART tyrkin_6 5 237 IPR020635 GO:0004713|GO:0006468
Vium8540g00001 250 FunFam PTI1-like tyrosine-protein kinase 3 45 247 - -
Vium8540g00001 250 MobiDBLite consensus disorder prediction 29 56 - -
Vium8540g00001 250 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8540g00001 250 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8540g00001 Vium-Chr8540 1676 7426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8540g00001 58 249 Receptor kinase-like Gene Family AT3G58690 56.477 3.45e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium8540g00001 PK_Tyr_Ser-Thr 5.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8540g00001 K13436 - gmx:100790016 381.333