Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8528g00006 ATGCACCATTTTCTGCTTGCTAGATTAACAACTAGGACCCCCCACTTTGGTGTTGTTTGCCACAATGCCATTCTTTTCTTCAATTCACGTACTTTATCTGTATCAAACACAAATAATCACAAAGGTGGCACCTTTAATGCATTTAGTATCATCAATTCATGTGGGTTGTCCCCTGAAAAGGCACTGGAAATCTCCAAAAGGTTGGAATTGAAAAACCCAGACGGGGCAAATGCTGCAATTGATCTTCTCAGGAACTATGGGTTCTCGGAGAGCCAGCTCAATAGCCTTATAAAGAAATTCCCTTCCGTGCTTTTGTCAAATTCAGACAAGATCCTTTTGCCAAAACTCAATTTCTTTCGTTCCATTGGGTTTTCAGCCACTGACCTTCCTAAATTCCTCGTTATGAAACCTACATTTCTGAAATCAAGCTTGGAGAAAACCATTATCCCTTGTTATGGGGTAATCAGAAGTCTAGTTCGCAATGATAATGAAGCAGTTTCCACTTTAAAGCATGGGCTGTGGTACTGTAGCAGAAATGTGGTGAATAATTCACTTCCAAACATAAAAGCTTTGAGACAGCTTGGCCTGCCTCAGGGCTCCATTTCTCTCCTGGTAGCCAATTTTCCTAGTGTCACATTTATGAAGCATGCAAAATTTGTGGAAGCTATGGAGAAAGTTAGGGAACTGGGGTTTGATCCTTTGAAAACAAATTTTGTTATGGCACTTAAAGTTTTTGCAGATATGAGTGAAGCATCATGGAAATCGAAGTTCGAGGTTTTGGAGAAGTGTGGCTGGTCAAGTGATATATTTCTTTTAGCTTACAAGAAGCATCCCCAGTTTATGGTCTCATCAGAACACAAGATTCTTAAAATAATGAGCTTTTTGATGAAGGATGTAGGTTTGGCCCCCGAAGACATTGCTAGATGCCCTGCGCTTCTTAAATGCAACTTGGAGAAGACAGTTATTCCTAGATTTGCAGTAGTTAAAATTTTGAAGCGAAGGGGGTTGGTAAAGAGTGATTTGCAAATAAGTACCTTTATTAAGATTAGTGAGAAATTGTTTCTGAAGAAATATGTGACTTGA 1083 0.3943 MHHFLLARLTTRTPHFGVVCHNAILFFNSRTLSVSNTNNHKGGTFNAFSIINSCGLSPEKALEISKRLELKNPDGANAAIDLLRNYGFSESQLNSLIKKFPSVLLSNSDKILLPKLNFFRSIGFSATDLPKFLVMKPTFLKSSLEKTIIPCYGVIRSLVRNDNEAVSTLKHGLWYCSRNVVNNSLPNIKALRQLGLPQGSISLLVANFPSVTFMKHAKFVEAMEKVRELGFDPLKTNFVMALKVFADMSEASWKSKFEVLEKCGWSSDIFLLAYKKHPQFMVSSEHKILKIMSFLMKDVGLAPEDIARCPALLKCNLEKTVIPRFAVVKILKRRGLVKSDLQISTFIKISEKLFLKKYVT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8528g00006 360 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 SMART mt_12 236 266 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 Pfam mTERF 80 307 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 Pfam mTERF 292 354 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 Gene3D Transcription termination factor 3, mitochondrial 160 360 IPR038538 -
Vium8528g00006 360 PANTHER CGI-12 PROTEIN-RELATED 49 359 IPR003690 GO:0003690|GO:0006355
Vium8528g00006 360 FunFam Mitochondrial transcription termination factor-like 144 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8528g00006 Vium-Chr8528 60022 61383 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium8528g00006 mTERF 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8528g00006 K15031 - gmx:106799612 506.908