Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8526g00005 ATGAGCCACCACAGGCCCAACTTCACACATCTGCAACGGCAAGGAGGTTTTAGATCCTATGATGGCCACACTTACAATCATCATGAATCCAATGAAGTGCCTGTGTTTTACAGATCTAACTCTACTCAAGCCACCGATGAAAGAACTTCCGATGTATTACCTCGACAACGGGTTTGGGCATGCATACATCCTGTAGGATTCCACCACATACCTTATTTTCCATCAGCAGCACCTAGAAGACAACAAATTATTCAGAATGAGCATATGGGAAGGCTGAGAGATATTTTCCTTCAGCCACCTTCAAGATATACATTCCAAACAAGCACACAAGCTGCCCCAGCGGTAGAAATTTCCAAATCAACAGTTTTGAGCAAGCTTGAGAAAGTAGTGTATGCTAGGAAGCTGAACTTATATTACAGAAACAATGCTGAAGAAAAACATTTGAAAGAGAAGAAGGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTAAGACTGGTGAAGAGGTGATGCTTACTCCATGCAAGCACATGTTTCATGAGGATTGCATAGTGCCGTGGCTAACAACTAAGGGCCAGTGCCCAGTTTGTAGGCGTGTGATTTGTGAGATGGGATGTGGGAACCCTTCATCCTTCAGCAACAATAACTGGACCACTTTGGAATCTAGCAACCTATTTAATGGAGAGCTTTTATCAGTTTTTAGGGACATGGAAGAAGCTTTTCAGTTCGGCATATGA 750 0.4253 MSHHRPNFTHLQRQGGFRSYDGHTYNHHESNEVPVFYRSNSTQATDERTSDVLPRQRVWACIHPVGFHHIPYFPSAAPRRQQIIQNEHMGRLRDIFLQPPSRYTFQTSTQAAPAVEISKSTVLSKLEKVVYARKLNLYYRNNAEEKHLKEKKEKDEDGKRCAICLEDFKTGEEVMLTPCKHMFHEDCIVPWLTTKGQCPVCRRVICEMGCGNPSSFSNNNWTTLESSNLFNGELLSVFRDMEEAFQFGI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8526g00005 249 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Vium8526g00005 249 FunFam RING/U-box superfamily protein 145 220 - -
Vium8526g00005 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
Vium8526g00005 249 Pfam Ring finger domain 160 202 IPR001841 -
Vium8526g00005 249 SMART ring_2 161 201 IPR001841 -
Vium8526g00005 249 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 66 203 - -
Vium8526g00005 249 SMART ringv_2 160 202 IPR011016 GO:0008270
Vium8526g00005 249 SUPERFAMILY RING/U-box 151 208 - -
Vium8526g00005 249 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8526g00005 Vium-Chr8526 49596 51180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8526g00005 128 248 C3H Transcription Factor Family AT3G58720 52.381 7.90e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8526g00005 - - vra:106780201 479.944