Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8526g00004 ATGGCCCACCGGTGGTGGACGGGGTCCGTCGGTCTTGAGAACTCGGGTGACTCGATGAGGAAACCGGATCTGGGATTTTCCATGAACGAGAGTGCGGTGACTACGAACCACACGGGGGAAGAAGAGGAGGAGAAAGAAAACAGCGACGAAGCTATTGACGTGGCCAACACGCGCCGCCCGAGGGGTCGTCCACCGGGCTCAAAGAACAAGCCCAAACCACCGATATTTGTCACCCGAGACCGCCCCAATGCGATGCGAAGCCACGTCATGGAGATTGCTAGCGACACCGACATCGCCAACTGCGTGGTCCAGTTCGCGCGAAGGCGCCAGCGCGACGTGTCCATTCTCAGCGGCAGCGGGGCCGTCGTGAACGTTACTCTCCGCCAGCCCACGGCTCCTGGCGCCGTCATGGCTGGCCAAGGTCACTTCGATATCCTCTCCCTCACCGGCTCGTTTCTCCCCAGGCCATCACCTCCCGGTGCCACCGGTCTCACCATCTATCTCGCAGGAGGCCAGGGACAAATCGTTGGCGATGGGGTGGTGGGCCCACTAGTGGCGGCTGGTCCAGTTTTGATAATGCGGTGA 585 0.6137 MAHRWWTGSVGLENSGDSMRKPDLGFSMNESAVTTNHTGEEEEEKENSDEXAIDVANTRRPRGRPPGSKNKPKPPIFVTRDRPNAMRSHVMEIASDTDIANCVVQFARRRQRDVSILSGSGAVVNVTLRQPTAPGAVMAGQGHFDILSLTGSFLPRPSPPGATGLTIYLAGGQGQIVGDGVVGPLVAAGPVLIMR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8526g00004 195 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 193 - -
Vium8526g00004 195 Gene3D - 86 194 - -
Vium8526g00004 195 MobiDBLite consensus disorder prediction 1 80 - -
Vium8526g00004 195 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 194 IPR014476 GO:0003680
Vium8526g00004 195 ProSiteProfiles PPC domain profile profile. 83 195 IPR005175 -
Vium8526g00004 195 PIRSF ESCAROLA 11 195 IPR014476 GO:0003680
Vium8526g00004 195 CDD DUF296 87 194 IPR005175 -
Vium8526g00004 195 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 194 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8526g00004 Vium-Chr8526 29737 30474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8526g00004 1 194 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 53.947 8.72e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8526g00004 - - vum:124847099 369.007