Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8525g00002 ATGTCACATTCTGGGAAACCCGTGTCCGAGTCAGGGCTGAGCGACCGGTTGCGCGACTCACTGAGTTGCTCTGACGATACCAACAAGCCCGATTTCAGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGGCCACGCCAGCAGTTCCACCACCACAGTGCGCCGACGAGTAGTAACAGTAGCAGTAGTAGTGGCGGCTCGACCGGGTCGGTTCCGGGTCGGAGCAACCCGGTTTCGGGGAGATCCCACTCCGGCGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTGTCCAAACCGGGTCACCGGAGATCTAATTCTGGTCAGAGTTTGAGTCAGAGTCAGAGATCCCCGTCGTCCTCGGCCGTCAATTCGCCGCCGCCGAATGTTCTCCCAGCCGGGAACATTTGCCCATCAGGGAGGGTTCTCAAGGCGGCGACGGTGGCGTCAGCCGCGAGCCGGAGCTCCAGGAGTGATGTCTTGGGGTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGTGGCGGCAAGGGGGGTGGTGGGAACAGCAGTGGTGGTGATGCGTCGAGTGTTAAGATCGGCGGCGGTGATTCGGTGAAGCGCGTGGATCCGGAGGAGGTGAAGAAGATGGGGAATGAGGAGTTCAAGAGAGGGCACTTTGGTGAGGCTTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGGGCAATGCTGCTTACCGGAGCAACCGGGCGGCAGCATTGACCGGATTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACCCTGTTTTTAAGGTTAGGACAGGTTGAGGATGCAAGGAAGCACCTTTGTTATCCTGGGCTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGGGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATGGATGGTGCTGAATCGTGTTTATCAGGGATTCCCAAAAGCGAGCCGCTTCCCAGTTCCTTATCACAGGCAAGATTTTTCGGGATGTTTTCTGAGGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATAGACCCCAGAAATGTTGAAGTTGCTGTTTTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTTCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGAGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCAGTGAAGGACTATGAACTTTTGCGGAGAGAATTGCCAGATGACAATGATGTTGCCGAAAATCTGTTTCATGCACAAGTAGCACTGAAGAAATCTCGTGGGGAAGAAGTACGTAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTTGCAATGTAAGCAGATATCTCCTTTCGTGGTTACACTCTGCAGTCGCTATCCATCTATCAACTTTCTTAAGGTGGATATTCAAGCAAGCCCCGCAGTTGCCACTGCTGAGAATGTTAGAGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGAAATGTTGGAACACTCTATTAGGCATTACAGCTTGTAG 2043 0.5066 MSHSGKPVSESGLSDRLRDSLSCSDDTNKPDFRELDLGSPVSTLRPRQQFHHHSAPTSSNSSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSLSQSQRSPSSSAVNSPPPNVLPAGNICPSGRVLKAATVASAASRSSRSDVLGSGTGNYGHGSIMRGGKGGGGNSSGGDASSVKIGGGDSVKRVDPEEVKKMGNEEFKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQMDGAESCLSGIPKSEPLPSSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNDVAENLFHAQVALKKSRGEEVRNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPFVVTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHEMLEHSIRHYSL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8525g00002 680 Gene3D Tetratricopeptide repeat domain 206 566 IPR011990 GO:0005515
Vium8525g00002 680 SMART tpr_5 400 433 IPR019734 GO:0005515
Vium8525g00002 680 SMART tpr_5 242 275 IPR019734 GO:0005515
Vium8525g00002 680 SMART tpr_5 480 513 IPR019734 GO:0005515
Vium8525g00002 680 SMART tpr_5 514 547 IPR019734 GO:0005515
Vium8525g00002 680 SMART tpr_5 446 479 IPR019734 GO:0005515
Vium8525g00002 680 SMART tpr_5 208 241 IPR019734 GO:0005515
Vium8525g00002 680 FunFam TPR repeat-containing thioredoxin TTL4 572 679 - -
Vium8525g00002 680 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Vium8525g00002 680 Pfam Thioredoxin 587 671 IPR013766 -
Vium8525g00002 680 SUPERFAMILY TPR-like 208 436 IPR011990 GO:0005515
Vium8525g00002 680 CDD TRX_family 585 666 - -
Vium8525g00002 680 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 677 IPR044534 -
Vium8525g00002 680 MobiDBLite consensus disorder prediction 19 33 - -
Vium8525g00002 680 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Vium8525g00002 680 MobiDBLite consensus disorder prediction 1 139 - -
Vium8525g00002 680 MobiDBLite consensus disorder prediction 152 168 - -
Vium8525g00002 680 Gene3D Glutaredoxin 573 679 - -
Vium8525g00002 680 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Vium8525g00002 680 MobiDBLite consensus disorder prediction 152 206 - -
Vium8525g00002 680 Coils Coil 520 540 - -
Vium8525g00002 680 Pfam Tetratricopeptide repeat 214 274 - -
Vium8525g00002 680 Pfam Tetratricopeptide repeat 402 433 IPR019734 GO:0005515
Vium8525g00002 680 MobiDBLite consensus disorder prediction 42 131 - -
Vium8525g00002 680 Pfam Tetratricopeptide repeat 482 513 IPR001440 GO:0005515
Vium8525g00002 680 SUPERFAMILY Thioredoxin-like 483 678 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8525g00002 Vium-Chr8525 55192 59319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8525g00002 445 590 U-box Gene Family AT3G07370 28.415 9.29e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8525g00002 - - gmx:100805790 1090.1