Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium850g00004 ATGGGCAACAACTGCGTGGGACCGAACGTCGGTAACGGCTTCCTCCAGTCCGTTTCGGCGGCGGTGTGGAAGACGCGCCCGCCGGAGTCCCGCCTTCCGCCTCCTTCCGCCGAGACCAAAACCTCGACTCCGGTACCGGACGCCCAGAAAGCCTCGGAACCCGCCCCTTCAAAACCAGCGGATCCTCCGAGCCGAGTGCAGAACACGCCGCCCGAGCCGGTCAAAATGCCCCAGCCGCTGGACCACGAGAAGCCGGCGTCGAGCCACACCGAGTCGAATCCCGGCGACAAGGCTAAGAAACCCACGCACGTGAAACGGGTGTCCAGTATGGGATTACAAGTCGAGTCCGTGCTGGGTCGAAAAACAGAGAACATGAAGGAGTTCTTCAGCTTGGGGAGGAAGCTGGGGCAGGGGCAATTCGGGACGACGTTTCTGTGCGTGCAAAAGGGGACGAACAAGGACTTCGCGTGCAAGTCCATCGCGAAGCGGAAGTTGACGACGCAAGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATCATGCACCACTTGGCGGGGCACCCCAACGTGGTTCAGATCGTTGGGGCATACGAGGACGCCGTTGCGGTGCACCTCGTGATGGAGCTCTGCGCTGGAGGAGAGCTCTTTGACAGGATCATACAGAGGGGGCATTACACCGAGAAGAAGGCCGCAGAACTTGCTAGGTTGATTGTTAGTGTGGTGGAGGCTTGTCACTCTCTTGGGGTCATGCACAGGGATTTGAAGCCCGAGAATTTTTTGTTCATGAATCAGCAGGAAGAGTCTCCCCTTAAGACCATTGATTTTGGACTCTCCGTGTTCTTTAGACCAGGTGAAACATTCACTGATGTGGTTGGGAGCCCGTACTATGTGGCCCCTGAAGTTTTGCGGAAGAACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATCTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGATGAAACGGAACAGGGAATATTTGAGCAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCCTGGCCAAGCATATCTGAAAGCGCAAAGGATCTTGTTCGAAGGATGCTTGTAAGGGACCCTAAAAAGCGGCTGACAGCACATGAAGTTCTTTGCCATCCATGGGTGCAAGTCGGAGGCGTTGCTCCTGATAAGCCACTTGACTCTGCTGTCTTGAGTCGTTTGAAGCAGTTCTCTGCAATGAATAAGCTAAAAAAAATAGCCATTCGAGTAATTGCTGAAAGTTTTTCTGAGGAAGAAATTGCAGGACTGAAAGAAATGTTCAGGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCTGTTCTTAAGGATTCTGAAATTGCTTGGTTAATGCAAGCGGTAAGTGCTTGCCTGCAATCCAAATTGGCCGCTCAATGTGCTACTGTTTCGTGTACTAAAGGACCTGTGACTGTTTATATAATGCAGGCAGACGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCAGCTATGGTACACCTAAACAAGATCCAGAAGGAAGATCATCTATATGCAGCATTCACATACTTTGACAAAGATGGGAGTGGATACATTACACCGGATGAGCTCCAACAAGCCTGCGAACAGTTTGGCTTGCAGGATTATCACCTGGATGAGATAATACGTGAAATTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGTTGCCATGATGCAAGACACTGGATTTGGCAAAAAGGGATTTTAG 1815 0.503 MGNNCVGPNVGNGFLQSVSAAVWKTRPPESRLPPPSAETKTSTPVPDAQKASEPAPSKPADPPSRVQNTPPEPVKMPQPLDHEKPASSHTESNPGDKAKKPTHVKRVSSMGLQVESVLGRKTENMKEFFSLGRKLGQGQFGTTFLCVQKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVVQIVGAYEDAVAVHLVMELCAGGELFDRIIQRGHYTEKKAAELARLIVSVVEACHSLGVMHRDLKPENFLFMNQQEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKNYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLVRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAESFSEEEIAGLKEMFRMIDTDNSGQITLEELKNGLERVGSVLKDSEIAWLMQAVSACLQSKLAAQCATVSCTKGPVTVYIMQADVDNSGTIDYGEFIAAMVHLNKIQKEDHLYAAFTYFDKDGSGYITPDELQQACEQFGLQDYHLDEIIREIDQDNDGRIDYSEFVAMMQDTGFGKKGF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium850g00004 604 ProSiteProfiles Protein kinase domain profile. 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium850g00004 604 FunFam Calcium-dependent protein kinase 1 395 598 - -
Vium850g00004 604 Gene3D Transferase(Phosphotransferase) domain 1 215 411 - -
Vium850g00004 604 ProSiteProfiles EF-hand calcium-binding domain profile. 531 566 IPR002048 GO:0005509
Vium850g00004 604 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Vium850g00004 604 SMART serkin_6 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium850g00004 604 MobiDBLite consensus disorder prediction 21 110 - -
Vium850g00004 604 Pfam Protein kinase domain 130 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium850g00004 604 FunFam Calcium-dependent protein kinase 1 131 214 - -
Vium850g00004 604 ProSitePatterns EF-hand calcium-binding domain. 544 556 IPR018247 -
Vium850g00004 604 SUPERFAMILY EF-hand 423 596 IPR011992 -
Vium850g00004 604 SUPERFAMILY Protein kinase-like (PK-like) 129 388 IPR011009 -
Vium850g00004 604 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 590 - -
Vium850g00004 604 MobiDBLite consensus disorder prediction 77 103 - -
Vium850g00004 604 Gene3D - 412 599 - -
Vium850g00004 604 MobiDBLite consensus disorder prediction 56 76 - -
Vium850g00004 604 FunFam Calcium-dependent protein kinase SK5 215 399 - -
Vium850g00004 604 Pfam EF hand 435 461 IPR002048 GO:0005509
Vium850g00004 604 ProSitePatterns EF-hand calcium-binding domain. 578 590 IPR018247 -
Vium850g00004 604 ProSitePatterns Protein kinases ATP-binding region signature. 135 162 IPR017441 GO:0005524
Vium850g00004 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vium850g00004 604 ProSiteProfiles EF-hand calcium-binding domain profile. 569 600 IPR002048 GO:0005509
Vium850g00004 604 Pfam EF-hand domain pair 534 595 IPR002048 GO:0005509
Vium850g00004 604 Gene3D Phosphorylase Kinase; domain 1 131 214 - -
Vium850g00004 604 CDD STKc_CAMK 128 386 - -
Vium850g00004 604 SMART efh_1 569 597 IPR002048 GO:0005509
Vium850g00004 604 SMART efh_1 535 563 IPR002048 GO:0005509
Vium850g00004 604 SMART efh_1 434 462 IPR002048 GO:0005509
Vium850g00004 604 SMART efh_1 499 527 IPR002048 GO:0005509
Vium850g00004 604 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Vium850g00004 604 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Vium850g00004 604 ProSiteProfiles EF-hand calcium-binding domain profile. 504 530 IPR002048 GO:0005509
Vium850g00004 604 CDD EFh 538 595 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium850g00004 Vium-Chr850 45602 51910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium850g00004 1 604 EF-hand Containing Proteins AT2G38910 72.250 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium850g00004 Pkinase 2.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium850g00004 K13412 K05681 gmx:100813232 1002.28