Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium850g00003 ATGGGCAACAACTGCGTGGGACCGAACGTCGGTAACGGCTTCCTCCAGTCCGTTTCGGCGGCGGTGTGGAAGACGCGCCCGCCGGAGTCCCGCCTTCCGCCTCCTTCCGCCGAGACCAAAACCTCGACTCCGGTACCGGACGCCCAGAAAGCCTCGGAACCCGCCCCTTCAAAACCAGCGGATCCTCCGAGCCGAGTGCAGAACACGCCGCCCGAGCCGGTCAAAATGCCCCAGCCGCTGGACCACGAGAAGCCGGCGTCGAGCCACACCGAGTCGAATCCCGGCGACAAGGCTAAGAAACCCACGCACGTGAAACGGGTGTCCAGTATGGGATTACAAGTCGAGTCCGTGCTGGGTCGAAAAACAGAGAACATGAAGGAGTTCTTCAGCTTGGGGAGGAAGCTGGGGCAGGGGCAATTCGGGACGACGTTTCTGTGCGTGCAAAAGGGGACGAACAAGGACTTCGCGTGCAAGTCCATCGCGAAGCGGAAGTTGACGACGCAAGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATCATGCACCACTTGGCGGGGCACCCCAACGTGGTTCAGATCGTTGGGGCATACGAGGACGCCGTTGCGGTGCACCTCGTGATGGAGCTCTGCGCTGGAGGAGAGCTCTTTGACAGGATCATACAGAGGGGGCATTACACCGAGAAGAAGGCCGCAGAACTTGCTAGGTTGATTGTTAGTGTGGTGGAGGCTTGTCACTCTCTTGGGGTCATGCACAGGGATTTGAAGCCCGAGAATTTTTTGTTCATGAATCAGCAGGAAGAGTCTCCCCTTAAGACCATTGATTTTGGACTCTCCGTGTTCTTTAGACCAGGTGAAACATTCACTGATGTGGTTGGGAGCCCGTACTATGTGGCCCCTGAAGTTTTGCGGAAGAACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATCTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGATGAAACGGAACAGGGAATATTTGAGCAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCCTGGCCAAGCATATCTGAAAGCGCAAAGGATCTTGTTCGAAGGATGCTTGTAAGGGACCCTAAAAAGCGGCTGACAGCACATGAAGTTCTTTGCCATCCATGGGTGCAAGTCGGAGGCGTTGCTCCTGATAAGCCACTTGACTCTGCTGTCTTGAGTCGTTTGAAGCAGTTCTCTGCAATGAATAAGCTAAAAAAAATAGCCATTCGAGTGAGTATCCACTATTTATTTGAGAATAGAAATACATTGCAGGTGCTCGAGAACTAG 1320 0.5333 MGNNCVGPNVGNGFLQSVSAAVWKTRPPESRLPPPSAETKTSTPVPDAQKASEPAPSKPADPPSRVQNTPPEPVKMPQPLDHEKPASSHTESNPGDKAKKPTHVKRVSSMGLQVESVLGRKTENMKEFFSLGRKLGQGQFGTTFLCVQKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVVQIVGAYEDAVAVHLVMELCAGGELFDRIIQRGHYTEKKAAELARLIVSVVEACHSLGVMHRDLKPENFLFMNQQEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKNYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLVRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVSIHYLFENRNTLQVLEN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium850g00003 439 Gene3D Transferase(Phosphotransferase) domain 1 216 430 - -
Vium850g00003 439 ProSiteProfiles Protein kinase domain profile. 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium850g00003 439 SMART serkin_6 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium850g00003 439 MobiDBLite consensus disorder prediction 21 110 - -
Vium850g00003 439 Gene3D Phosphorylase Kinase; domain 1 131 215 - -
Vium850g00003 439 FunFam Calcium-dependent protein kinase SK5 215 399 - -
Vium850g00003 439 MobiDBLite consensus disorder prediction 77 103 - -
Vium850g00003 439 MobiDBLite consensus disorder prediction 56 76 - -
Vium850g00003 439 Pfam Protein kinase domain 130 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium850g00003 439 ProSitePatterns Protein kinases ATP-binding region signature. 135 162 IPR017441 GO:0005524
Vium850g00003 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vium850g00003 439 CDD STKc_CAMK 128 386 - -
Vium850g00003 439 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 422 - -
Vium850g00003 439 FunFam Calcium-dependent protein kinase 1 131 214 - -
Vium850g00003 439 SUPERFAMILY Protein kinase-like (PK-like) 129 388 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium850g00003 Vium-Chr850 39791 44864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium850g00003 1 429 EF-hand Containing Proteins AT2G38910 72.581 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium850g00003 Pkinase 1.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium850g00003 K13412 K05681 gmx:100813232 738.799