Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium850g00001 ATGGAGAAAGCAAACAGCACATCACTAGTGAGAACAAAATCTGATCAGTTAGTAGAATCAATGGTGGCGGCGATGAAGTCGCCGCCGTCGAGCGACCACTCTGCCAACGGGGTGGCGGAAGGGGGTGGCACCCTGTCGAGGAAGTCGAGTCGGCGGCTGACCGGCGCGTCACCGGGACGCGGCGGCGGAGGGAAGAACACTCACATAAGAAAGTCTAGAAGTGCTCAAATAAGCCAAATGAAGTTGGATTTTGATGATTTGAGCAGTGGCGCAGCGCTTAGCAGAGCCTCAAGTGCAAGCTTGGGACTCTCTTTCTCCTTCACTGGCTTCACCATGCCTCCTGAAGAAATCGCTGACTCCAAACCCTTCAGCGACGATGATATTCCTGAAGATATCGAAGCTGGACCTAGGACAAAGTTTCAAACGGAACCTACTTTACCCATATTTCTCAAGTTCACGGATGTGTGCTACAAGATAGTGATCAAAGGCATGACAACAACTGAGGAGAAGGATATCTTGAATGGGATAACTGGTTCTGTAAATCCAGGAGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAAACAACTCTTTTAAACCTTCTTGGAGGCAGGTTATGCCATCCTATAAGTGGTGGATCTATCACTTACAATGATCAACCATAATCTAAGTTCCTTAAGAGCAGGATAGGATTTGTGACACAAGACGATGTTCTGTTTCCTCACTTAACTGTGAAAGAGACTTTGACATACGCAGCCAGGCTAAGGCTTCCAAAGACATACACAAAGGAGCAAAAGGAAAAACGAGCTTTGGATGTAATCTATGAGCTTGGCTTGGAGAGGTGCCAAGACACTATGATTGGAGGTTCCTTTGTGCGTGGAGTTTCTGGTGGTGAGAGGAAGAGGGTTTGTATTGGAAATGAGATCATAATCAACCCTTCTCTTCTTTTTCTTGATGAACCAACATCTGGTTTGGATTCCACAACAGCCTTGAGGATCGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACAGTGGTGACAACAATCCACCAGCCATCTAGCAGACTATTTCACAAATTTGACAAGTTGATCCTTCTGGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGACTTACTTCCAGTCTATAGGATGTTCACCACTTATTTCCATGAACCCAGCAGAGTTTTTGCTAGACCTTGCCAATGGAAACATAAATGATGTCTCCCTACCCTCAGAGTTGGAAGATAGAGTGCACATGGAAAATGCAGAAGCAGAAACACCAAATGGGAAACCATCACCAGCAGTTGTACACGAGTATCTGGTGGAGGCATATGAAACTCGAGTGGCAGAAGCAGAAAAGAAAAGACTAATGGTTCCTATACCTCTTGATGAAGCAGTGAAGTCTAAAGTCTGTTCTCATAAGAGACAATGGGGAGCAAGTTGGGATGAGCAATATTCCATATTATTTTGGAGAGGAATCAAAGAACGTAGACATGACTATTTTAGCTGGTTAAGAATCACTCAAGTTTTATCTACTGCTGTCATCTTAGGATTGCTCTGGTGGCAATCAGATACTAAAAACCCAAAAGATCTGCAAGATCAGGCAGGATTGCTATTCTTCATTGCTGTTTTCTGGGGATTTTTTCCTGTTTTCACTGCAATATTCACATTTCCTCAAGAAAGAGCCATGCTTAGTAAGGAGAGAGCAGCAGATATGTACAGACTAAGTGCATACTTTCTGGCAAGAACCACCAGTGACCTTCCACTTGACCTCATTTTACCAGTGCTTTTCCTACTTGTTGTTTATTTCATGGCCGGTCTCAGACTCAGTGTTGCACCATTTTTCCTCACAATTCTCACTGTCTTCCTCTGCATAGTGGCTGCTCAGGGACTTGGACTTGCTATTGGAGCCACATTAATGGACTTGAAAAGAGCAACAACTTTAGCTTCAGTCACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTTGTGCAGAGAGTACCCATATTTTTTTCATGGATTCGGTACATGTCTTTCAACTACCACACCTACAAACTTCTGCTGAAGGTGCAATATGAACACATTTCACCAATCATAAATGGTATCAGAATTGATAGTGGTGCAACAGAGGTAGCTGCTCTAATAGCCATGGTTTTTGGCTACCGTTTCTTGGCATATCTTTCTCTAAGGAGAATGAAACTTCAATCTGGAGCTTAA 2241 0.4391 MEKANSTSLVRTKSDQLVESMVAAMKSPPSSDHSANGVAEGGGTLSRKSSRRLTGASPGRGGGGKNTHIRKSRSAQISQMKLDFDDLSSGAALSRASSASLGLSFSFTGFTMPPEEIADSKPFSDDDIPEDIEAGPRTKFQTEPTLPIFLKFTDVCYKIVIKGMTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLCHPISGGSITYNDQPXSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEFLLDLANGNINDVSLPSELEDRVHMENAEAETPNGKPSPAVVHEYLVEAYETRVAEAEKKRLMVPIPLDEAVKSKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHISPIINGIRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium850g00001 746 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 396 IPR003439 GO:0005524
Vium850g00001 746 MobiDBLite consensus disorder prediction 1 15 - -
Vium850g00001 746 ProSitePatterns ABC transporters family signature. 296 310 IPR017871 GO:0005524|GO:0016887
Vium850g00001 746 FunFam ABC transporter G family member 22 160 390 - -
Vium850g00001 746 MobiDBLite consensus disorder prediction 1 75 - -
Vium850g00001 746 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 124 734 - -
Vium850g00001 746 SMART AAA_5 182 373 IPR003593 GO:0016887
Vium850g00001 746 Pfam ABC transporter 173 324 IPR003439 GO:0005524
Vium850g00001 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 388 IPR027417 -
Vium850g00001 746 Gene3D - 150 390 IPR027417 -
Vium850g00001 746 Pfam ABC-2 type transporter 491 700 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium850g00001 Vium-Chr850 8879 23322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium850g00001 172 410 Calmodulin-binding Proteins AT2G36910 29.796 3.66e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium850g00001 K05681 - gmx:100798801 1373.22