Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8500g00004 ATGATGACCAACTAAAATGTGGTGATTCACGAGGTTATTAACACGTTGATTGCCGTGACAGCGTCCATTTCAAAATCAACCGTACTAAGCAGTGCAACAGTGCCACAATCCATGGCTGTGCTTAGCGGGTTTTGGAGCCTGCCCCATAAGAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTGGTGCTTGGATTGATTCAATGAGAGCCTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATATTGGATTCTTTATCACCCTTCAGCTCTGAATACCTTCGAGCAAATAACATATAATTCCAAAGGGAAGCAGGTTGTAGTTTTTCTTGACTACGATGGAACACTCTCCCCTATCGTTACGGATCCGGACAAAGCCTTCATGAGTCGAAAGATGAGAGCGACGCTGAAGGGAATCGCAAGACATTTTCCCACAGCAATCGTGACCGGGAGGTGCAGGGACAAGGTCTATAACTTTGTGAAACTGGCAGAACTTTACTATGCCGGGAGCCATGGCATGGACATCAAGGGGCCAACAAAAAGCCGAAGTCCAAAGCAAGGTAATAACAAAGCAGTATTGTTCCAACCCGCGAGTCAATTCTTACCCATGATCGATGAGGTGTACAAGGTGTTGTTAGAGAAAACAAAGTCTGTCCCAGGGGCTAAGGTCGAGAACAACAAGTTTTGCTTGTCCGTTCACTTTCGTTGTGTTGACGAAAAGAGCTGGGCACCCCTGGCGGAGAAAGTTAGATTGGTGCTCACTGAGTACCCACAACTTAAGCTAACCCAAGGCAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGAAAGGCTCTTGAATATTTGTTAGAATCATTAGGATACGAGAATTCGAGTGATGTATTTCCAATCTATATTGGTGATGATCGAACAGATGAGGATGCTTTTAAGGTTTTACGCAGTAGGGGTCAAGGAATTGGGATACTTGTTTCTAGTGTTGCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGAGATTGGTGGAATGGAAAAGATCCAGCAGTGTGAAGTGCACAGAGTTGTAG 1110 0.4477 MMTNXNVVIHEVINTLIAVTASISKSTVLSSATVPQSMAVLSGFWSLPHKNLVKRLEGAKVGAWIDSMRASSPTRAKSESQEKRYWILYHPSALNTFEQITYNSKGKQVVVFLDYDGTLSPIVTDPDKAFMSRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSRSPKQGNNKAVLFQPASQFLPMIDEVYKVLLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLTEYPQLKLTQGRKVLEIRPTIKWDKGKALEYLLESLGYENSSDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSSVAKETDASYTLQDPSEVEQFLRRLVEWKRSSSVKCTEL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8500g00004 369 CDD HAD_TPP 110 348 - -
Vium8500g00004 369 FunFam Trehalose 6-phosphate phosphatase 200 276 - -
Vium8500g00004 369 Gene3D - 224 367 IPR023214 -
Vium8500g00004 369 Gene3D - 109 214 IPR023214 -
Vium8500g00004 369 NCBIfam HAD-IIB family hydrolase 111 320 IPR006379 -
Vium8500g00004 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 45 364 IPR044651 GO:0004805|GO:0005992
Vium8500g00004 369 FunFam Trehalose 6-phosphate phosphatase 109 196 - -
Vium8500g00004 369 Pfam Trehalose-phosphatase 112 346 IPR003337 GO:0003824|GO:0005992
Vium8500g00004 369 NCBIfam trehalose-phosphatase 106 356 IPR003337 GO:0003824|GO:0005992
Vium8500g00004 369 SUPERFAMILY HAD-like 110 358 IPR036412 -
Vium8500g00004 369 FunFam Trehalose 6-phosphate phosphatase 206 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8500g00004 Vium-Chr8500 50158 52783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8500g00004 105 355 Trehalose Biosynthesis Gene Families AT1G70290 26.766 1.87e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8500g00004 K01087 - gmx:100788641 660.988