Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8500g00001 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAGCTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAGAGTCCTTCCTCAACCCCTTCCTTTTCTTCCTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCTTCAACCTCCTTCCCTGTTATGTACTCAAACAACTGCTCAGCATCGATGACCCATGCATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCATGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATATCTCAGATCCAGGCTCAAATCCAGACCCAGAGCCAGCAGCAGCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCCACGAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACAAGGCTCTGGCTGGGAACGTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGGTGATTCTGAGAAGGGTTCGGACGACAACACCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACGTTTGCCGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCAGATAGTTTTAATCTCTATAAGTACCCTTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.5405 MAAMMGFYSSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPIYFPSSTSFPVMYSNNCSASMTHAFADGLSLSNTQNIIGFAHGQPTSLLGLNHLTPSQISQIQAQIQTQSQQQQNPNTLNFLGTKPIPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPPEKGDSEKGSDDNTSNKCCKVEASSSPVTTESEGSEGSSPLSDLTFADVSEPQWEGDSDSFNLYKYPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8500g00001 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Vium8500g00001 353 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Vium8500g00001 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vium8500g00001 353 MobiDBLite consensus disorder prediction 262 292 - -
Vium8500g00001 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Vium8500g00001 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Vium8500g00001 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Vium8500g00001 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Vium8500g00001 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Vium8500g00001 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Vium8500g00001 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 353 - -
Vium8500g00001 353 MobiDBLite consensus disorder prediction 255 338 - -
Vium8500g00001 353 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8500g00001 Vium-Chr8500 23755 25659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8500g00001 1 353 AP2-EREBP Transcription Factor Family AT1G78080 53.226 1.92e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium8500g00001 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8500g00001 K09286 - gmx:100800478 426.017