Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium84g00001 ATGGATTCTAGGAGGCGTAGAAATATGCAACGCAAGTTGCAACAACTTCGATCGGTCACAAACTCCAGTGCTGTTAACAAAGCCTCAATTATTGTGGATGCCACAAGATACATAGAGGAGCTGAAGCAAAAAGTCGATGGATTGAACTCTGAGCTTGGAACCGCTGAATCATCAATCTCCCAAGGCGAATTACCCATGGTCACCGTAGAAACCCTAGAAAGGGGTTTCCTCATTAATGTGTTTTCTGAAAGGAATTGCCCCGGCATGCTTGGGGCAATTCTGGACGCGTTTGAAGAACTGGGACTCGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTTGAAGCTGTTGGAGGAGAAAGTGAAGAGAAGGAAAGCATCGATGCACAAGTGGTGAAGCAAGCAGTGATGCAAGCAATCCAAAACATGGATTAA 444 0.455 MDSRRRRNMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQGELPMVTVETLERGFLINVFSERNCPGMLGAILDAFEELGLDVLDARVSCEDTFQLEAVGGESEEKESIDAQVVKQAVMQAIQNMD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium84g00001 147 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 143 - -
Vium84g00001 147 CDD ACT_UUR-ACR-like 87 143 - -
Vium84g00001 147 Coils Coil 31 58 - -
Vium84g00001 147 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 60 IPR036638 GO:0046983
Vium84g00001 147 Gene3D - 1 63 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium84g00001 Vium-Chr84 45351 47111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium84g00001 4 123 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 30.189 2.22e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium84g00001 - - gmx:100500546 265.003