Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8497g00002 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCCAATGTTCACAGAGTCTTTGGTGCCAGCAATGTCAATAAGATGCTTCAGGAGCTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCAGTGTATGGGTGTGTGGGGGCCATTTCATCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCTCAAGCCGAAGCAGTGCATCTCAGAGTGCGTCAGAATGCATCTCTCTACAGCCCCACTAGCCCTACCAACACTGCTTCTCCATCTTCCAAGATCATTCACTCACAACAACCCAAACCTATTTTTGATATCGACATGGACATGATCGTCGACCACACCACCTACACTGATTCAATCTGGTGA 507 0.4911 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQNASLYSPTSPTNTASPSSKIIHSQQPKPIFDIDMDMIVDHTTYTDSIW 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8497g00002 168 Coils Coil 92 112 - -
Vium8497g00002 168 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vium8497g00002 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 135 - -
Vium8497g00002 168 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8497g00002 Vium-Chr8497 7 2621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8497g00002 1 168 AS2 family AT1G31320 74.419 4.38e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium8497g00002 LOB 6e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8497g00002 - - vum:124847068 321.627