Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8497g00001 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCCAATGTTCACAGAGTCTTTGGTGCCAGCAATGTCAATAAGATGCTTCAGGAGCTTCAAAACGTGGTTTTGTCACCAAAAGTCAGGGTCAAGCACAACACAAAGCGAAACTTAACAAGCAACGAGCTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCAGTGTATGGGTGTGTGGGGGCCATTTCATCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCTCAAGCCGAAGCAGTGCATCTCAGAGTGCGTCAGAATGCATCTCTCTACAGCCCCACTAGCCCTACCAACACTGCTTCTCCATCTTCCAAGATCATTCACTCACAACAACCCAAACCTATTTTTGATATCGACATGGACATGATCGTCGACCACACCACCTACACTGATTCAATCTGGTGA 579 0.4836 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELQNVVLSPKVRVKHNTKRNLTSNELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQNASLYSPTSPTNTASPSSKIIHSQQPKPIFDIDMDMIVDHTTYTDSIW 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8497g00001 192 Coils Coil 116 136 - -
Vium8497g00001 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 159 - -
Vium8497g00001 192 Pfam Lateral organ boundaries (LOB) domain 13 63 IPR004883 -
Vium8497g00001 192 Pfam Lateral organ boundaries (LOB) domain 83 134 IPR004883 -
Vium8497g00001 192 ProSiteProfiles LOB domain profile. 12 137 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8497g00001 Vium-Chr8497 7 3105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8497g00001 1 192 AS2 family AT1G31320 65.306 1.04e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium8497g00001 LOB 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8497g00001 - - vum:124847068 381.333