Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8495g00008 ATGGAAGAGGGACGAGAAGATGCAGCGTCAGCAGAGCGAAGGCCATCCAACATGTCATGGTGGCCTTCAGATTTTGTTGAAAATTTTGAATCCGTTTCCTTAAGCTCTCAAGATGAAACCTTAAATAATAAAGAATTAGCAGGACATGCTAACCAAGATGTTATGTCCCCTCAAAAGGCGTCACAAATTCTCTGGCGCACCGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTAGATGAGCTTCAAGCTTTGGGTGGAGAGGCTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAATTCAAATCCACCAGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGATCAAATGTAGAAAGTCCAGCAAAAGCTGCACTTGAGGAATCCTCCCACATGTTTGAGAATCATGGTGTCCAGATGCTGGGGCAAATAAGACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGATTGTGTAGACTCATACAAGCATATGTCAGTTATTGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACAAAATCAATTCTTATGACACACATTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTAGAACCAAATAGTCCTTTGTATGGAGTTTCAGATAGTGTTGAAAAGGAGGAAAATCTCCAATTCCACAGAAGATTTGAAGTATCTTCAAATGTATCTGGCCTTCCCCTGCGAAACAGGATGTTACGATCATATACCAGTCTAGAAAGAAATTTGAGTTTTTCACAAAGTGAACCCAACATTGCAACTGCGTTTGGTCGGCGGAGTCGAAAAAAGGTCATTGCTGATCAAAGGACTGCTAGTTCAAGTCCAGAACATCCATCACTGCGAGCACATGGACTGTCTAAGCTTAGTGGTGACAGAACTGCTTTTAGAGATTTTGCTGATGACCAGTCTAAACCAAGATCCAGCTATAAATCAGATGGTGCTTCCTCGTCAGAAGCTCGTCGAATACGTAGAAGAAGTATCAGCATGACGCCAGAGATTGGTGATGATATTGCAAGGGCTGTACGGGCAATGAATGAATCATTAAAGCAAAAACGTCTTCTGAGAGAGAAAGAGGCCGGTGATAATTCATTGTCCCATTCACCAAATGATAGAGCCGGCAGTATGGATCTTCTGAAACAAAAGTCAAATTTCAATCTTGATGGTCATCAAGAGAGATCCCCCTTGTATTCACTACACCATGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCATCCCCGCACGATTATAGAGGACAAGCTTCTGAGAGTAGTGGAGTGTCAGAATATCCAATGAATGACGAACTGGAGTCTACTTGGAATAAAGTTCTTCAATCGCCAATGTTCAATGATGGACCTCTGTTGCCATATGAAGAATGGAACATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAACGTTATCTTATTTCTTGGTGCATGCACAAAGCCGCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATATGCCGCGGCCTAATGCACATACATCGTATGAAGATTATTCACCGCGATGTGAAAAGTGCTAATTGTCTTGTGGACAAGCATTGGACAGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAACAGAGTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTTATTCGAAATGAACCATTCACCGAAAAATGTGATATATTTAGCTTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCACCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAATGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTACTCTCTGTTTTGA 2451 0.4259 MEEGREDAASAERRPSNMSWWPSDFVENFESVSLSSQDETLNNKELAGHANQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQALGGEAFRADVIVVDSEKDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRSNVESPAKAALEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAADCVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSDSVEKEENLQFHRRFEVSSNVSGLPLRNRMLRSYTSLERNLSFSQSEPNIATAFGRRSRKKVIADQRTASSSPEHPSLRAHGLSKLSGDRTAFRDFADDQSKPRSSYKSDGASSSEARRIRRRSISMTPEIGDDIARAVRAMNESLKQKRLLREKEAGDNSLSHSPNDRAGSMDLLKQKSNFNLDGHQERSPLYSLHHDPVTSQKAMSLPSSPHDYRGQASESSGVSEYPMNDELESTWNKVLQSPMFNDGPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITESPMRDSLSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8495g00008 816 MobiDBLite consensus disorder prediction 408 422 - -
Vium8495g00008 816 SMART serkin_6 560 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8495g00008 816 MobiDBLite consensus disorder prediction 385 399 - -
Vium8495g00008 816 MobiDBLite consensus disorder prediction 351 422 - -
Vium8495g00008 816 CDD STKc_MAP3K-like 566 808 - -
Vium8495g00008 816 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Vium8495g00008 816 Pfam Protein tyrosine and serine/threonine kinase 561 808 IPR001245 GO:0004672|GO:0006468
Vium8495g00008 816 ProSitePatterns Protein kinases ATP-binding region signature. 566 587 IPR017441 GO:0005524
Vium8495g00008 816 ProSiteProfiles Protein kinase domain profile. 560 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8495g00008 816 SUPERFAMILY Protein kinase-like (PK-like) 535 808 IPR011009 -
Vium8495g00008 816 MobiDBLite consensus disorder prediction 448 467 - -
Vium8495g00008 816 MobiDBLite consensus disorder prediction 495 522 - -
Vium8495g00008 816 Gene3D Transferase(Phosphotransferase) domain 1 639 815 - -
Vium8495g00008 816 FunFam Serine/threonine-protein kinase isoform 1 550 638 - -
Vium8495g00008 816 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 313 808 - -
Vium8495g00008 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Vium8495g00008 816 Gene3D Phosphorylase Kinase; domain 1 553 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8495g00008 Vium-Chr8495 51345 67556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8495g00008 1 815 MAP Kinase Kinase Kinase AT3G58640 68.453 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vium8495g00008 PK_Tyr_Ser-Thr 5.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8495g00008 - - gmx:100807193 1492.63