LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8495g00007	ATGGAAGAGGGACGAGAAGATGCAGCGTCAGCAGAGCGAAGGCCATCCAACATGTCATGGTGGCCTTCAGATTTTGTTGAAAATTTTGAATCCGTTTCCTTAAGCTCTCAAGATGAAACCTTAAATAATAAAGAATTAGCAGGACATGCTAACCAAGATGTTATGTCCCCTCAAAAGGCGTCACAAATTCTCTGGCGCACCGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTAGATGAGCTTCAAGCTTTGGGTGGAGAGGCTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAATTCAAATCCACCAGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGATCAAATGTAGAAAGTCCAGCAAAAGCTGCACTTGAGGAATCCTCCCACATGTTTGAGAATCATGGTGTCCAGATGCTGGGGCAAATAAGACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGATTGTGTAGACTCATACAAGCATATGTCAGTTATTGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACAAAATCAATTCTTATGACACACATTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTAGAACCAAATAGTCCTTTGTATGGAGTTTCAGATAGCAGTGTTGAAAAGGAGGAAAATCTCCAATTCCACAGAAGATTTGAAGTATCTTCAAATGTATCTGGCCTTCCCCTGCGAAACAGGATGTTACGATCATATACCAGTCTAGAAAGAAATTTGAGTTTTTCACAAAGTGAACCCAACATTGCAACTGCGTTTGGTCGGCGGAGTCGAAAAAAGGTCATTGCTGATCAAAGGACTGCTAGTTCAAGTCCAGAACATCCATCACTGCGAGCACATGGACTGTCTAAGCTTAGTGGTGACAGAACTGCTTTTAGAGATTTTGCTGATGACCAGTCTAAACCAAGATCCAGCTATAAATCAGATGGTGCTTCCTCGTCAGAAGCTCGTCGAATACGTAGAAGAAGTATCAGCATGACGCCAGAGATTGGTGATGATATTGCAAGGGCTGTACGGGCAATGAATGAATCATTAAAGCAAAAACGTCTTCTGAGAGAGAAAGAGGCCGGTGATAATTCATTGTCCCATTCACCAAATGATAGAGCCGGCAGTATGGATCTTCTGAAACAAAAGTCAAATTTCAATCTTGATGGTCATCAAGAGAGATCCCCCTTGTATTCACTACACCATGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCATCCCCGCACGATTATAGAGGACAAGCTTCTGAGAGTAGTGGAGTGTCAGAATATCCAATGAATGACGAACTGGAGTCTACTTGGAATAAAGTTCTTCAATCGCCAATGTTCAATGATGGACCTCTGTTGCCATATGAAGAATGGAACATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAACGTTATCTTATTTCTTGGTGCATGCACAAAGCCGCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATATGCCGCGGCCTAATGCACATACATCGTATGAAGATTATTCACCGCGATGTGAAAAGTGCTAATTGTCTTGTGGACAAGCATTGGACAGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAACAGAGTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTTATTCGAAATGAACCATTCACCGAAAAATGTGATATATTTAGCTTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCACCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAATGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTACTCTCTGTTTTGA	2454	0.4262	MEEGREDAASAERRPSNMSWWPSDFVENFESVSLSSQDETLNNKELAGHANQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQALGGEAFRADVIVVDSEKDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRSNVESPAKAALEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAADCVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSDSSVEKEENLQFHRRFEVSSNVSGLPLRNRMLRSYTSLERNLSFSQSEPNIATAFGRRSRKKVIADQRTASSSPEHPSLRAHGLSKLSGDRTAFRDFADDQSKPRSSYKSDGASSSEARRIRRRSISMTPEIGDDIARAVRAMNESLKQKRLLREKEAGDNSLSHSPNDRAGSMDLLKQKSNFNLDGHQERSPLYSLHHDPVTSQKAMSLPSSPHDYRGQASESSGVSEYPMNDELESTWNKVLQSPMFNDGPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITESPMRDSLSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF	817

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	449	468	-	-
	Vium8495g00007	817	Gene3D	Phosphorylase Kinase; domain 1	554	639	-	-
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	352	423	-	-
	Vium8495g00007	817	Pfam	Ethylene-responsive protein kinase Le-CTR1	58	253	-	-
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	386	400	-	-
	Vium8495g00007	817	SUPERFAMILY	Protein kinase-like (PK-like)	536	809	IPR011009	-
	Vium8495g00007	817	Gene3D	Transferase(Phosphotransferase) domain 1	640	816	-	-
	Vium8495g00007	817	ProSitePatterns	Protein kinases ATP-binding region signature.	567	588	IPR017441	GO:0005524
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	409	423	-	-
	Vium8495g00007	817	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	309	809	-	-
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	272	296	-	-
	Vium8495g00007	817	CDD	STKc_MAP3K-like	567	809	-	-
	Vium8495g00007	817	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	680	692	IPR008271	GO:0004672\|GO:0006468
	Vium8495g00007	817	Pfam	Protein tyrosine and serine/threonine kinase	562	809	IPR001245	GO:0004672\|GO:0006468
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	496	523	-	-
	Vium8495g00007	817	SMART	serkin_6	561	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8495g00007	817	ProSiteProfiles	Protein kinase domain profile.	561	817	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8495g00007	817	FunFam	Serine/threonine-protein kinase isoform 1	551	639	-	-
	Vium8495g00007	817	MobiDBLite	consensus disorder prediction	272	294	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8495g00007	Vium-Chr8495	51345	67556	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8495g00007	1	816	MAP Kinase Kinase Kinase	AT3G58640	68.453	0.0	1139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Vium8495g00007		PK_Tyr_Ser-Thr	5.8e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8495g00007	-		-	gmx:100807193	1488.01