Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8495g00006 ATGGAAGAGGGACGAGAAGATGCAGCGTCAGCAGAGCGAAGGCCATCCAACATGTCATGGTGGCCTTCAGATTTTGTTGAAAATTTTGAATCCGTTTCCTTAAGCTCTCAAGATGAAACCTTAAATAATAAAGAATTAGCAGGACATGCTAACCAAGATGTTATGTCCCCTCAAAAGGCGTCACAAATTCTCTGGCGCACCGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTAGATGAGCTTCAAGCTTTGGGTGGAGAGGCTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAATTCAAATCCACCAGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGATCAAATGTAGAAAGTCCAGCAAAAGCTGCACTTGAGGAATCCTCCCACATGTTTGAGAATCATGGTGTCCAGATGCTGGGGCAAATAAGACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGATTGTGTAGACTCATACAAGCATATGTCAGTTATTGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACAAAATCAATTCTTATGACACACATTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTAGAACCAAATAGTCCTTTGTATGGAGTTTCAGATAGCAGTGTTGAAAAGGAGGAAAATCTCCAATTCCACAGAAGATTTGAAGTATCTTCAAATGTATCTGGCCTTCCCCTGCGAAACAGGATGTTACGATCATATACCAGTCTAGAAAGAAATTTGAGTTTTTCACAAAGTGAACCCAACATTGCAACTGCGTTTGGTCGGCGGAGTCGAAAAAAGGTCATTGCTGATCAAAGGACTGCTAGTTCAAGATCCAGCTATAAATCAGATGGTGCTTCCTCGTCAGAAGCTCGTCGAATACGTAGAAGAAGTATCAGCATGACGCCAGAGATTGGTGATGATATTGCAAGGGCTGTACGGGCAATGAATGAATCATTAAAGCAAAAACGTCTTCTGAGAGAGAAAGAGGCCGGTGATAATTCATTGTCCCATTCACCAAATGATAGAGCCGGCAGTATGGATCTTCTGAAACAAAAGTCAAATTTCAATCTTGATGGTCATCAAGAGAGATCCCCCTTGTATTCACTACACCATGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCATCCCCGCACGATTATAGAGGACAAGCTTCTGAGAGTAGTGGAGTGTCAGAATATCCAATGAATGACGAACTGGAGTCTACTTGGAATAAAGTTCTTCAATCGCCAATGTTCAATGATGGACCTCTGTTGCCATATGAAGAATGGAACATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAACGTTATCTTATTTCTTGGTGCATGCACAAAGCCGCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATATGCCGCGGCCTAATGCACATACATCGTATGAAGATTATTCACCGCGATGTGAAAAGTGCTAATTGTCTTGTGGACAAGCATTGGACAGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAACAGAGTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTTATTCGAAATGAACCATTCACCGAAAAATGTGATATATTTAGCTTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCACCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAATGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTACTCTCTGTTTTGA 2358 0.4254 MEEGREDAASAERRPSNMSWWPSDFVENFESVSLSSQDETLNNKELAGHANQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQALGGEAFRADVIVVDSEKDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRSNVESPAKAALEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAADCVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSDSSVEKEENLQFHRRFEVSSNVSGLPLRNRMLRSYTSLERNLSFSQSEPNIATAFGRRSRKKVIADQRTASSRSSYKSDGASSSEARRIRRRSISMTPEIGDDIARAVRAMNESLKQKRLLREKEAGDNSLSHSPNDRAGSMDLLKQKSNFNLDGHQERSPLYSLHHDPVTSQKAMSLPSSPHDYRGQASESSGVSEYPMNDELESTWNKVLQSPMFNDGPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITESPMRDSLSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8495g00006 785 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Vium8495g00006 785 MobiDBLite consensus disorder prediction 417 436 - -
Vium8495g00006 785 Gene3D Phosphorylase Kinase; domain 1 522 607 - -
Vium8495g00006 785 MobiDBLite consensus disorder prediction 356 388 - -
Vium8495g00006 785 Pfam Protein tyrosine and serine/threonine kinase 530 777 IPR001245 GO:0004672|GO:0006468
Vium8495g00006 785 SMART serkin_6 529 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8495g00006 785 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 309 777 - -
Vium8495g00006 785 SUPERFAMILY Protein kinase-like (PK-like) 504 777 IPR011009 -
Vium8495g00006 785 ProSiteProfiles Protein kinase domain profile. 529 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8495g00006 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Vium8495g00006 785 Gene3D Transferase(Phosphotransferase) domain 1 608 784 - -
Vium8495g00006 785 CDD STKc_MAP3K-like 535 777 - -
Vium8495g00006 785 MobiDBLite consensus disorder prediction 272 296 - -
Vium8495g00006 785 MobiDBLite consensus disorder prediction 464 491 - -
Vium8495g00006 785 FunFam Serine/threonine-protein kinase isoform 1 519 607 - -
Vium8495g00006 785 ProSitePatterns Protein kinases ATP-binding region signature. 535 556 IPR017441 GO:0005524
Vium8495g00006 785 MobiDBLite consensus disorder prediction 362 376 - -
Vium8495g00006 785 MobiDBLite consensus disorder prediction 272 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8495g00006 Vium-Chr8495 51344 67556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8495g00006 1 784 MAP Kinase Kinase Kinase AT3G58640 66.667 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vium8495g00006 PK_Tyr_Ser-Thr 5.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8495g00006 - - gmx:100807193 1415.98