Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8495g00001 ATGGTCGTAGTAAATCAGCATAGAGAAATTCAAGATTTGAAAGGCAAATCAGAGAAAAACAAGGACGAAGAGAGAGAAAAAAAAGGAACCTTTGCATTTGTACAAATTGAGGATCTTCAAGCAAGTGAGGCCATTAACGATGACGGCGAGGTCGGAATCGTGACGCTAGGTTCCAAACCCCAAATAATCGACCTCGACACCCCCAATCCCCTCACGTTGCTTCATAAGAAACCTCAATTAAATCGAAAACCTTTTCTGCAATTCTCTCTCCCCAAGAAGGCCGAGTGGATCCAATTTGGGATACCGCATCCCAACCTGGCTGTGGTATTGCTGGACAACCAACCGGAGAAGAAGCACTACAGAGGAGTCGACCAGCGGCCTTGGGGAAAGTTCGCCGCTGAGATCTGCGACCCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACCACCATCGAGGCCGCAAAGGCCTACGATCGTGCTGCCTTCAGGCTCCGTGGCTCAAAGGTCATTCTCAACTTCCCACTCGAAGCAGGCGCGATAAGTGGCACCGTCGAGGCCGAAGGTGAAAGGAAGCGGCGGCACGAGGAGAAGGAGGTAGAGGAAGTGAAGCCGGTGGTGAAGAAGGAGAAAACAACGGAACATGAGGTGAACTGTTTTCGGGAGATGTCGTTAACACCTTTAACTTCAATCTTGAACCTAATTTGA 714 0.5014 MVVVNQHREIQDLKGKSEKNKDEEREKKGTFAFVQIEDLQASEAINDDGEVGIVTLGSKPQIIDLDTPNPLTLLHKKPQLNRKPFLQFSLPKKAEWIQFGIPHPNLAVVLLDNQPEKKHYRGVDQRPWGKFAAEICDPNKRGSRVWLGTFDTTIEAAKAYDRAAFRLRGSKVILNFPLEAGAISGTVEAEGERKRRHEEKEVEEVKPVVKKEKTTEHEVNCFREMSLTPLTSILNLI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8495g00001 237 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vium8495g00001 237 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Vium8495g00001 237 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vium8495g00001 237 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Vium8495g00001 237 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vium8495g00001 237 MobiDBLite consensus disorder prediction 1 27 - -
Vium8495g00001 237 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vium8495g00001 237 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vium8495g00001 237 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vium8495g00001 237 PANTHER DNA-BINDING DOMAIN 76 197 IPR044808 GO:0003700|GO:0009873
Vium8495g00001 237 FunFam Ethylene-responsive transcription factor 2 118 179 - -
Vium8495g00001 237 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8495g00001 Vium-Chr8495 3970 4772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8495g00001 59 216 AP2-EREBP Transcription Factor Family AT5G47230 51.337 5.69e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium8495g00001 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8495g00001 K09286 - gmx:100816039 217.238