Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8491g00010 ATGGATGATGGTGATACTCTCAGATTTACCGATGATGAACCAGTTGTGGAACTTGGCAGTGACCATAATGATCCATTTGTGGGATTAGAGAATCATTTTTTTCGAGAAGAAGATTATTATAATAAGCTGAGGACTCGAAGACATGTGTCGAGTTCTGCAATTGCACTACGGTGCAGTACTCCTCTTTGTATTAGAAACTCCTTTTTGAAAAGCAATTCAGAGGAGGAAGAGGACATTTTTAGAAGCCAAACACTAAAATTTGATGACCTCATCCCTTCCATTATTGGTTGTAATGGTCGGTCACGCTATCTCTATGACTTTCGTTGGATTAAGAAAATTGGTAAGGGAAACTTAAACGAAGTTTTTAAAGTATTGAAGCGATTAGATGGCTGCATGTATGCTGTGAAATGTACCATCAAGCGGTTGCGTACGGAACCAGAAAGGCTTAAAGCTTTTAAAGAAGCTCAATCTTTGGCTGCCATAGGTTTCCATAAGAATATAGTGAGATATTATTCTTCGTGGATTGAGGATGAACAAATGTATACTCAAATGGAGTTTTGTGATCACAACTTATCTAGTGAAAATTGTACAACATTGCTTACCGAACGACATGAAATGGATGTTTTATATCAGGTTTCTAGTGCACTGCAATTTATACATGAAAAGGGAATAGCTCATCTTCATGTCAAGCCAGAAAATATTTACGTCAAAGATGGTATTTATAAGCTTGGTGGTTTTGGATGTGCGACTCTATTAGACAATAGCTTGCTTGTTGAAGAGGGTGATGCACGGTACATGCCGCTGGAGATTCTCAATAAGAATTATGATCACCTAGATAAGGCAGATATCTTCTCCCTAGGAGCTTCCATGTTTGACATAATTCGAAGGTCACATTTGCCAAAAGCAGAAACTGAGTTCTCTAAACTTAAAGAGGGAAAGGTGCCACACTTGCCTGGAGTTACAATCCAGTTTCAAAACTTGCTCCAGGTCATGATGGACCCTGATCCTCTTAAGCGTCCTTCCGCCACTGAGATATTGGGAAATTCAATATTCAGAGGGTCCCTTAAAATGACATAA 1077 0.389 MDDGDTLRFTDDEPVVELGSDHNDPFVGLENHFFREEDYYNKLRTRRHVSSSAIALRCSTPLCIRNSFLKSNSEEEEDIFRSQTLKFDDLIPSIIGCNGRSRYLYDFRWIKKIGKGNLNEVFKVLKRLDGCMYAVKCTIKRLRTEPERLKAFKEAQSLAAIGFHKNIVRYYSSWIEDEQMYTQMEFCDHNLSSENCTTLLTERHEMDVLYQVSSALQFIHEKGIAHLHVKPENIYVKDGIYKLGGFGCATLLDNSLLVEEGDARYMPLEILNKNYDHLDKADIFSLGASMFDIIRRSHLPKAETEFSKLKEGKVPHLPGVTIQFQNLLQVMMDPDPLKRPSATEILGNSIFRGSLKMT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8491g00010 358 Pfam Protein kinase domain 110 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8491g00010 358 SUPERFAMILY Protein kinase-like (PK-like) 103 353 IPR011009 -
Vium8491g00010 358 ProSiteProfiles Protein kinase domain profile. 107 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8491g00010 358 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 73 349 - -
Vium8491g00010 358 Gene3D Transferase(Phosphotransferase) domain 1 187 354 - -
Vium8491g00010 358 FunFam Wee1-like protein kinase 186 355 - -
Vium8491g00010 358 Gene3D Phosphorylase Kinase; domain 1 96 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8491g00010 Vium-Chr8491 67580 71283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8491g00010 41 351 Core Cell Cycle Gene Families AT1G02970 51.111 9.48e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Vium8491g00010 Pkinase 2.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8491g00010 K06632 - gmx:100784055 406.371