Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8491g00008 ATGAATACGAAAATGCAGAAAGAAAAGCCGGAGCTGTTGCCTTCATCCGGAGACGATGACGACATCATTCTCAGTCAGCAACTGTTTTGCACACCGGATTACTTAACTCCAGAAGATCAGTTTCCTTTGAAAGGCTTCCATAGTAACATCGACAAGGTGGAGGAAGATAGCCCTTGCCCCAAGTCACCAGAGAAGCCGTATGCTACGAAAACCAAGAGATGCCGAATGGATGATGGTGATACTCTCAGATTTACCGATGATGAACCAGTTGTGGAACTTGGCAGTGACCATAATGATCCATTTGTGGGATTAGAGAATCATTTTTTTCGAGAAGAAGATTATTATAATAAGCTGAGGACTCGAAGACATGTGTCGAGTTCTGCAATTGCACTACGGTGCAGTACTCCTCTTTGTATTAGAAACTCCTTTTTGAAAAGCAATTCAGAGGAGGAAGAGGACATTTTTAGAAGCCAAACACTAAAATTTGATGACCTCATCCCTTCCATTATTGGTTGTAATGGTCGGTCACGCTATCTCTATGACTTTCGTTGGATTAAGAAAATTGGTAAGGGAAACTTAAACGAAGTTTTTAAAGTATTGAAGCGATTAGATGGCTGCATGTATGCTGTGAAATGTACCATCAAGCGGTTGCGTACGGAACCAGAAAGGCTTAAAGCTTTTAAAGAAGCTCAATCTTTGGCTGCCATAGGTTTCCATAAGAATATAGTGAGATATTATTCTTCGTGGATTGAGGATGAACAAATGTATACTCAAATGGAGTTTTGTGATCACAACTTATCTAGTGAAAATTGTACAACATTGCTTACCGAACGACATGAAATGGATGTTTTATATCAGGTTTCTAGTGCACTGCAATTTATACATGAAAAGGGAATAGCTCATCTTCATGTCAAGCCAGAAAATATTTACGTCAAAGATGGTATTTATAAGCTTGGTGGTTTTGGATGTGCGACTCTATTAGACAATAGCTTGCTTGTTGAAGAGGGTGATGCACGGTACATGCCGCTGGAGATTCTCAATAAGAATTATGATCACCTAGATAAGGCAGATATCTTCTCCCTAGGAGCTTCCATGTTTGACATAATTCGAAGGTCACATTTGCCAAAAGCAGAAACTGAGTTCTCTAAACTTAAAGAGGGAAAGGTGCCACACTTGCCTGGAGTTACAATCCAGTTTCAAAACTTGCTCCAGGTCATGATGGACCCTGATCCTCTTAAGCGTCCTTCCGCCACTGAGATATTGGGAAATTCAATATTCAGAGGGTCCCTTAAAATGACATAA 1302 0.4025 MNTKMQKEKPELLPSSGDDDDIILSQQLFCTPDYLTPEDQFPLKGFHSNIDKVEEDSPCPKSPEKPYATKTKRCRMDDGDTLRFTDDEPVVELGSDHNDPFVGLENHFFREEDYYNKLRTRRHVSSSAIALRCSTPLCIRNSFLKSNSEEEEDIFRSQTLKFDDLIPSIIGCNGRSRYLYDFRWIKKIGKGNLNEVFKVLKRLDGCMYAVKCTIKRLRTEPERLKAFKEAQSLAAIGFHKNIVRYYSSWIEDEQMYTQMEFCDHNLSSENCTTLLTERHEMDVLYQVSSALQFIHEKGIAHLHVKPENIYVKDGIYKLGGFGCATLLDNSLLVEEGDARYMPLEILNKNYDHLDKADIFSLGASMFDIIRRSHLPKAETEFSKLKEGKVPHLPGVTIQFQNLLQVMMDPDPLKRPSATEILGNSIFRGSLKMT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8491g00008 433 MobiDBLite consensus disorder prediction 1 20 - -
Vium8491g00008 433 ProSiteProfiles Protein kinase domain profile. 182 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8491g00008 433 FunFam Wee1-like protein kinase 261 430 - -
Vium8491g00008 433 Gene3D Phosphorylase Kinase; domain 1 171 261 - -
Vium8491g00008 433 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 96 424 - -
Vium8491g00008 433 SUPERFAMILY Protein kinase-like (PK-like) 178 428 IPR011009 -
Vium8491g00008 433 Gene3D Transferase(Phosphotransferase) domain 1 262 429 - -
Vium8491g00008 433 MobiDBLite consensus disorder prediction 1 16 - -
Vium8491g00008 433 Pfam Protein kinase domain 185 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8491g00008 Vium-Chr8491 67580 71315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8491g00008 19 426 Core Cell Cycle Gene Families AT1G02970 46.651 1.66e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Vium8491g00008 Pkinase 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8491g00008 K06632 - gmx:100784055 498.819