Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8490g00001 ATGTTTCTGAATTGTTTGGGCATGTGCTGTTCGAAGCCCACAACAAATACAAATTCATCTCGGAGACAGTTTCCATCGTTAATAGAAGAACTGTGCCATCAATTTTCTCTCATCGATCTCAGGAAAGCCACCGATAACTTTGATACAAACAGAGTAATAGGACGTGGATTATTTAGTGAAGTATATAAAGGCTGTTTACAGCATAATGGGGTTTCTGATTACACGGTCGCAATAAAGCGATTTAAGGATCAAGGATGGGAAGCGTTCAACACGGAAATAGAATTGTTATGTCAGCTTCATCACCCCAGATGTGTGTCTCTTATAGGATTCTGCAACCACGAAAATGAGAAGATTCTTGTATACGAGTACATGTCCAATGGATCTCTAGACGAACAACTACAAGATGGTAAACTATCATGGAAGAAGAGGCTAGAAATTTGCATAGGAGTAGCACGTGGGCTACACTACATTCACACCGGAGCTAAACGTACCATCTTTCACTGCATCCTAGGTCCTAATACCATCCTTTTGGATGACCACATGGAGCCAAAACTCTCTGGTTTTGGTGTTAGCCTGCAGGGATCACGTTTTATGTCAAAGCAGAAGCAAATCAATGTAGAGCATGTTATGGGTACTTGGGGCTTCATGGCTGCGCTGGTCAACGATGGTACCATCACAGCTAAATGGGATGTTTTCTCATTTGGTTTGGTTCTACTCGATGTTGTGTGCAGGAGAACCCTGGCTGAAAAAGAATTTCCGGAGAACCACCTTATTGAGGAGAAAATTGATCCGATTCTCAAAGGAAATATTGCACCAGATTGTTGGCAAGTCATGATAAATTGCTTGACGTATGAACCAGATGAGCGACCTATGGTGGGTCTATTGAGGAGGAAGTTCCTGTGGATTACAGTAACACCAATAACACCTGAGTCAACTATATAA 942 0.4193 MFLNCLGMCCSKPTTNTNSSRRQFPSLIEELCHQFSLIDLRKATDNFDTNRVIGRGLFSEVYKGCLQHNGVSDYTVAIKRFKDQGWEAFNTEIELLCQLHHPRCVSLIGFCNHENEKILVYEYMSNGSLDEQLQDGKLSWKKRLEICIGVARGLHYIHTGAKRTIFHCILGPNTILLDDHMEPKLSGFGVSLQGSRFMSKQKQINVEHVMGTWGFMAALVNDGTITAKWDVFSFGLVLLDVVCRRTLAEKEFPENHLIEEKIDPILKGNIAPDCWQVMINCLTYEPDERPMVGLLRRKFLWITVTPITPESTI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8490g00001 313 ProSiteProfiles Protein kinase domain profile. 47 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8490g00001 313 Gene3D Phosphorylase Kinase; domain 1 8 123 - -
Vium8490g00001 313 ProSitePatterns Protein kinases ATP-binding region signature. 53 79 IPR017441 GO:0005524
Vium8490g00001 313 Pfam Protein tyrosine and serine/threonine kinase 49 296 IPR001245 GO:0004672|GO:0006468
Vium8490g00001 313 SUPERFAMILY Protein kinase-like (PK-like) 21 292 IPR011009 -
Vium8490g00001 313 PANTHER OS07G0166700 PROTEIN 31 293 IPR045272 GO:0004714|GO:0006468
Vium8490g00001 313 Gene3D Transferase(Phosphotransferase) domain 1 124 303 - -
Vium8490g00001 313 FunFam Receptor-like protein kinase ANXUR2 11 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8490g00001 Vium-Chr8490 3566 4848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8490g00001 3 293 Receptor kinase-like Gene Family AT3G51550 38.170 2.12e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium8490g00001 PK_Tyr_Ser-Thr 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8490g00001 - - pvu:PHAVU_008G028600g 457.988