Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium848g00006 ATGGAGGAGATGTCATTTGTGGTTGCAGTGCCATTAAGAGTAGGTAATTGTTGTTCAGTCTGTGATAACACAACCATAGTTCCCCACATGGATGTATCCAGGTTTAAGCTGATGGCGGATACAGGGTTGTTATCTAATTCTGTAACTAAGGTTTTCACCAAGACAGTTGCAGGTTCCGATGATTGTGATGATAGTGGCAATATAGAGGATGAAGCTGGAATTACTGAGGTTATACCAGCAAAACAGGATAGAGAAGGAGAGAGTCCTATGTTAGATATGATATCCCAAGATAGAAGTACTTTGGTTGGTGATGAAGTGTTAGCCGATGAAATTGAGGAAGATTCATTATCATTGGAAGGTGATCAGGTTGTTGATAGCTCATGTTCTCTTTCGGCAGTCAGTGAGAACAGTAGTGTGTGTGGAGAGGAGTCCTTGTGTTTCGATGCTACTTCAGATGTTGGGACACCATTTTCTGCTTATGTAGATAAGAGCATTGGTGCTGTCAATATTGCTGCCGAGGCAGTTGATTTGGAGGAATCAAATGTTGACACAGATATTACAACAGAACCTCTTGCTGCGGCAGTGAGCCTTGAAGAAGAGAATGGAATTAGAACTGGCCCTAAGCCTTCTGATGCTGTTCTTCATCAATTGCCTCAGGAAAAGGGGGTGAGTGGAATGGTTGGTCGGAGTGTTTTTGAATTGGATTATACCCCACTTTATGGATTCATATCTGTGTGTGGAAGAAGACCTGAGATGGAGGATGCACTTGCAACTGTACCTCGATTTATGAAAATTCCTATTCAGATGCTAATTGGTGACCGGGTGCTTGATGGAATAAACAAGTGTTTCAGTCAGCAGACGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCAAGATCGTATCCACAAGGCTTTGTCCGAGGAAATAGAATTTTTCAAGGAAGCTCTAATCAGTGGAAGTATGAAGGAAGGTTGTCAACATCAGTGGAAAAAAGCTTTAACCAATTGTTTCATAAAGGTTGATGCTGAAGTTGGAGGGAAAGTTGATAATGAACCTGTTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTGTTATTTGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGCAAAGAACCCATTGCATTATCGGTGGACCATAAACCCAACCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAAGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATCGGTGATAGATATTTGAAGCCATGGATTATTCCAGAACCAGAAGTTAAGTTTCTTCCCCGCACAAAAGAAGACGAGTGTCTCATTCTGGCGAGTGATGGTCTGTGGGATGTGATGACGAACGAAGAGGTGTGTGACCTGGCCCGGCGACGGATAGTTCTCTGGTACAAGAAAAATGGCTTGGAACAACCATCGTCAGAAAGGGGAGAGGGAGTTGATCCTGCTGCACAAGCAGCAGCAGAATACCTATCAAACCGTGCACTTCAGAAAGGAAGCAAAGATAACATCACTGTGATTGTGATTGATTTGAAACCCCAAAGGAAATATAAGAGCAAGTCATGA 1665 0.4288 MEEMSFVVAVPLRVGNCCSVCDNTTIVPHMDVSRFKLMADTGLLSNSVTKVFTKTVAGSDDCDDSGNIEDEAGITEVIPAKQDREGESPMLDMISQDRSTLVGDEVLADEIEEDSLSLEGDQVVDSSCSLSAVSENSSVCGEESLCFDATSDVGTPFSAYVDKSIGAVNIAAEAVDLEESNVDTDITTEPLAAAVSLEEENGIRTGPKPSDAVLHQLPQEKGVSGMVGRSVFELDYTPLYGFISVCGRRPEMEDALATVPRFMKIPIQMLIGDRVLDGINKCFSQQTTHFFGVYDGHGGSQVAKYCQDRIHKALSEEIEFFKEALISGSMKEGCQHQWKKALTNCFIKVDAEVGGKVDNEPVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKEPIALSVDHKPNRPDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVKFLPRTKEDECLILASDGLWDVMTNEEVCDLARRRIVLWYKKNGLEQPSSERGEGVDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKPQRKYKSKS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium848g00006 554 ProSiteProfiles PPM-type phosphatase domain profile. 239 544 IPR001932 -
Vium848g00006 554 PANTHER PROTEIN PHOSPHATASE 196 544 IPR015655 GO:0004722|GO:0006470
Vium848g00006 554 CDD PP2Cc 240 544 IPR001932 -
Vium848g00006 554 Gene3D - 226 554 IPR036457 -
Vium848g00006 554 SMART PP2C_4 227 542 IPR001932 -
Vium848g00006 554 FunFam Protein phosphatase 2C 16 227 554 - -
Vium848g00006 554 Pfam Protein phosphatase 2C 274 537 IPR001932 -
Vium848g00006 554 SUPERFAMILY PP2C-like 232 546 IPR036457 -
Vium848g00006 554 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium848g00006 Vium-Chr848 10342 15398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium848g00006 1 554 PP2C-type Phosphatase Gene Family AT1G17550 46.996 1.01e-161 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium848g00006 K14497 - gmx:100805281 961.444