Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium848g00001 ATGGAGGAGATGTCATTTGTGGTTGCAGTGCCATTAAGAGTAGGTAATTGTTGTTCAGTCTGTGATAACACAACCATAGTTCCCCACATGGATGTATCCAGGTTTAAGCTGATGGCGGATACAGGGTTGTTATCTAATTCTGTAACTAAGGTTTTCACCAAGACAGTTGCAGGTTCCGATGATTGTGATGATAGTGGCAATTTAGAGGATGAAGCTGGAATTACTGAGGTTATACCAGCAAAACAGGATAGAGAAGGAGAGAGTCCTATGTTAGATATGATATCCCAAGATAGAAGTACTTTGGTTGGTGATGAAGTGTTAGCCGATGAAATTGAGGAAGATTCATTATCATTGGAAGGTGATCAGGTTGTTGATAGCTCATGTTCTCTTTCGGCAGTCAGTGAGAACAGTAGTGTGTGTGGAGAGGAGTCCTTGTGTTTCGATGCTACTTCAGATGTTGGGACACCATTTTCTGCTTATGTAGATAAGAGCATTGGTGCTGTCAATATTGCTGCCGAGGCAGTTGATTTGGAGGAATCAAATGTTGACACAGATATTACAACAGAACCTCTTGCTGCGGCAGTGAGCCTTGAAGAAGAGAATGGAATTAGAACTGGCCCTAAGCCTTCTGATGCTGTTCTTCATCAATTGCCTCAGGAAAAGGGGGTGAGTGGAATGGTTGGTCGGAGTGTTTTTGAATTGGATTATACCCCACTTTATGGATTCATATCTGTGTGTGGAAGAAGACCTGAGATGGAGGATGCACTTGCAACTGTACCTCGATTTATGAAAATTCCTATTCAGATGCTAATTGGTGACCGGGTGCTTGATGGAATAAACAAGTGTTTCAGTCAGCAGACGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCAAGATCGTATCCACAAGGCTTTGTCCGAGGAAATAGAATTTTTCAAGGAAGCTCTAATCAGTGGAAGTATGAAGGAAGGTTGTCAACATCAGTGGAAAAAAGCTTTAACCAATTGTTTCATAAAGGTTGATGCTGAAGTTGGAGGGAAAGTTGATAATGAACCTGTTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTGTTATTTGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGCAAAGAACCCATTGCATTATCGGTGGACCATAAACCCAACCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAAGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATCGGTATGTACTTTTTAGGCATTTATTTTATTTGCAGTGTCGTGTGCAGACTAGTTTCAGTTTCATGGAAATCTTTATTTGCAATGCGTTTGTCATTATCATCTTACTTTACTAATGAAGAAAGCAGATGCTAA 1458 0.4129 MEEMSFVVAVPLRVGNCCSVCDNTTIVPHMDVSRFKLMADTGLLSNSVTKVFTKTVAGSDDCDDSGNLEDEAGITEVIPAKQDREGESPMLDMISQDRSTLVGDEVLADEIEEDSLSLEGDQVVDSSCSLSAVSENSSVCGEESLCFDATSDVGTPFSAYVDKSIGAVNIAAEAVDLEESNVDTDITTEPLAAAVSLEEENGIRTGPKPSDAVLHQLPQEKGVSGMVGRSVFELDYTPLYGFISVCGRRPEMEDALATVPRFMKIPIQMLIGDRVLDGINKCFSQQTTHFFGVYDGHGGSQVAKYCQDRIHKALSEEIEFFKEALISGSMKEGCQHQWKKALTNCFIKVDAEVGGKVDNEPVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKEPIALSVDHKPNRPDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGMYFLGIYFICSVVCRLVSVSWKSLFAMRLSLSSYFTNEESRC 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium848g00001 485 Pfam Protein phosphatase 2C 274 449 IPR001932 -
Vium848g00001 485 ProSiteProfiles PPM-type phosphatase domain profile. 239 485 IPR001932 -
Vium848g00001 485 PANTHER PROTEIN PHOSPHATASE 193 454 IPR015655 GO:0004722|GO:0006470
Vium848g00001 485 Gene3D - 226 468 IPR036457 -
Vium848g00001 485 FunFam Protein phosphatase 2C 50 237 463 - -
Vium848g00001 485 CDD PP2Cc 240 453 IPR001932 -
Vium848g00001 485 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Vium848g00001 485 SMART PP2C_4 227 458 IPR001932 -
Vium848g00001 485 SUPERFAMILY PP2C-like 232 448 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium848g00001 Vium-Chr848 4317 7831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium848g00001 1 445 PP2C-type Phosphatase Gene Family AT1G72770 42.763 7.92e-103 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium848g00001 K14497 - gmx:100805281 751.51