Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8482g00001 ATGGCCAAAAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCTCAAACCAAACCCAAACACAAGATTGCTATGGCTTATGTGACCCTGTTTGCCCTTACAACTGTTACACTAACCAAGACTACTTCTTATCTCCACCACCACCATTTGTTTCACCTTCAACACAAGTTAACCACATATCCTCCTATTTGATCATCCTCGGTACTCTCTTCGCTGTCATTTTTGTTGTCATAGGTTTCTACGTCATCAAACTGAAGTGCTATGCTGCATGGTGTGGGTGGAGGCTCAACGGATCCCTTCCTTCTCAATCAGACACCACCACGGAGGAGTTTCTCCATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCTCGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAGCAACGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTCCAAGAAGAAGAGACCTTGAGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATCGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGTGCAGGTATTCTCTCTAACAGTGTTACTTCTGAAGCACCCGTGTCCAATTTGGAACAAGAGAATGCGAATTTGGGAAGAAATCAAGACACCCTTATGGAAAATTCAAGGAATGAAGGCTTGTTAAACAGCAACACCGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGATCAAACTCAGAACCATCACGTTCTGGATATTGAGATTCACACCGAAATGCGGTCTGTTTCAACAGAATCTGAAATCCATCATGTTGTTGATGATCATAAGCACGATGAAACACACTTGCAAGCTGTTAATCGACGGAAGCAAGAGCAAGATGTTGATTACCACCCAAAAACTTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTACATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCCAGAGGTTGCATGACTCTAAACCCTATGCTCCATTCATCCCTGTTAGAATTTTCAATCTGTTAG 1128 0.4353 MAKKLRKLFPDETTTSNQTQTQDCYGLCDPVCPYNCYTNQDYFLSPPPPFVSPSTQVNHISSYLIILGTLFAVIFVVIGFYVIKLKCYAAWCGWRLNGSLPSQSDTTTEEFLHENQVDHPVWLIASVGLQQSVINSITVCKYKSNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGILSNSVTSEAPVSNLEQENANLGRNQDTLMENSRNEGLLNSNTVAGESSEALELVDESNSKDRVHDQTQNHHVLDIEIHTEMRSVSTESEIHHVVDDHKHDETHLQAVNRRKQEQDVDYHPKTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNPMLHSSLLEFSIC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8482g00001 375 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Vium8482g00001 375 SUPERFAMILY RING/U-box 144 201 - -
Vium8482g00001 375 Coils Coil 210 230 - -
Vium8482g00001 375 CDD RING-H2_EL5-like 153 196 - -
Vium8482g00001 375 Pfam Ring finger domain 153 196 IPR001841 -
Vium8482g00001 375 SMART ring_2 154 195 IPR001841 -
Vium8482g00001 375 PANTHER RING-H2 FINGER PROTEIN ATL16 46 347 IPR044600 GO:0016567|GO:0016740
Vium8482g00001 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Vium8482g00001 375 FunFam RING-H2 finger protein ATL54 129 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8482g00001 Vium-Chr8482 29479 31422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8482g00001 3 206 C3H Transcription Factor Family AT1G72220 46.552 5.05e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8482g00001 - - gmx:100805705 558.14