Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium847g00001 ATGGAGACTGTTCTTTCCAACCACTCCCCACCTTTGGAATTCAAGGGTTTGAGCAATGAGGAGGAAGAGTCACTTCTAGGGCAAGTTGAAATATGGAGGTACATGACAAGCTTCACTGATTCCATGGCCCTAAAATCTGTGGTAGAGCTTCGCATAGCAGATATAATAGACAGCTATGGCAAACCACTATCCTTGTCTCAAATTGTGGAGAACATTGAGAATGCACCTTCCCCAGATGTGAGTCTTCTGGAGAGAGTGATGAGAGTGATGGTGCGCAGAAAGATCTTCAGTGCAGAGAAATCAGAGACTGGAGAGACCCTTTACGGCTTGACGCGTGCTTCCAAATGGATCCTATGAGACACAAAAATCACCTTAGCACCATTCTTGCTGTTGGAGAACCACCCAATTCACCTCAACCCTGCTCACTACATCAGTGAGATTGTGAGAGAAGGCACCAAAAACGGCACTGCTTTCTTCAGGTGCCATGGGCATGAACAATTTGAGATGACGGGGTTGGACTCCGAGTACAACAGGTTGTTCAATGAGGGGATGGTGTGCACCACTAAGTTCATCACCAAGGCTGTCATCAATGGCTACAGAGATGGGTTTAACAAGATTGAGTCTTTGGTTGATGTGGGAGGTGGCATTGGAGGCTCTCTTTCTGAGATTGTCAGGGCTTACCCTCACATCAAAGGCATCAACTTTGACTTGCCTCATGTCGTTTCCACTGCACCTAACTTTGATGGAATCACTCATGTTGGAGGTGACATGTTCGTCTCCATTCCCTCTGCTGATGCCATTTACATGAAGTGGATTTTGCATGACTGGAGCGACGAGCACTGCGTGAAGATCCTGAAGAACTGCAGGAAAGCAATACCAGAGAAGACAGGAAAGGTGATAATTGTGGATCATGTGCTTCGACCCGAAGGGAACGAACCCTTCACTGATGTTGGCATTGCATTTGACATGATGCTTCTCGCTCACAACGCTGGTGGCAAAGAGAGGACCGAAGAGAATTGGAAGTGGCTATTCAAAGAAACAGGATTCACTCGTTACAACATCATCAAGATCAATGCTCTCCCATCTATCATCGAGGCGTATCCAATCTGA 1110 0.4667 METVLSNHSPPLEFKGLSNEEEESLLGQVEIWRYMTSFTDSMALKSVVELRIADIIDSYGKPLSLSQIVENIENAPSPDVSLLERVMRVMVRRKIFSAEKSETGETLYGLTRASKWILXDTKITLAPFLLLENHPIHLNPAHYISEIVREGTKNGTAFFRCHGHEQFEMTGLDSEYNRLFNEGMVCTTKFITKAVINGYRDGFNKIESLVDVGGGIGGSLSEIVRAYPHIKGINFDLPHVVSTAPNFDGITHVGGDMFVSIPSADAIYMKWILHDWSDEHCVKILKNCRKAIPEKTGKVIIVDHVLRPEGNEPFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFTRYNIIKINALPSIIEAYPI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium847g00001 369 PIRSF O-mtase 12 369 IPR016461 GO:0008168
Vium847g00001 369 PANTHER O-METHYLTRANSFERASE 31 351 IPR016461 GO:0008168
Vium847g00001 369 FunFam O-methyltransferase family protein 119 367 - -
Vium847g00001 369 SUPERFAMILY "Winged helix" DNA-binding domain 22 120 IPR036390 -
Vium847g00001 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 367 IPR029063 -
Vium847g00001 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 368 IPR016461 GO:0008168
Vium847g00001 369 Pfam O-methyltransferase domain 143 349 IPR001077 GO:0008171
Vium847g00001 369 Gene3D Vaccinia Virus protein VP39 119 369 IPR029063 -
Vium847g00001 369 Pfam Dimerisation domain 42 91 IPR012967 GO:0046983
Vium847g00001 369 CDD AdoMet_MTases 209 306 - -
Vium847g00001 369 Gene3D - 15 117 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium847g00001 Vium-Chr847 9380 15024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium847g00001 42 355 Monolignol Biosynthesis Gene Families AT5G54160 38.629 9.49e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium847g00001 K22588 - gmx:100812768 677.552