Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8474g00003 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTTGGTAGTGATGCGAGCGTTGAAGGGAGCTTATGCTTCTCTGATGCCGATGATGGGTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGATTGTGTTTCTGATCCTGAGGCTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGGTGATTTGGCTGCTGCTCACAAGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATCTGTCATTCTGTTGCTCGGAATGTTTATGGAGGAAACGAGGATTCGACAGAGCATGTTAGCGACGGTAACAATGGTACTACAGCAGCAGCCACAGTCTCCACAACTGCTCCTTTTACAGAACCTCGAAGATTTTGGCATGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTTGCTTTTGTGATATCATGGCTTTTCCACTTCAATGTGACATCGTCGTAG 693 0.4661 MATLQMSHVDLEQGNHRRSVVGSDASVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFDCVSDPEAGGVPHSGRASSVSECSVELETRTGVPEIKVHLAKVEKDCRICHMGLVSDSHESGAPIELGCSCKGDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYGGNEDSTEHVSDGNNGTTAAATVSTTAPFTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVTSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8474g00003 230 SUPERFAMILY RING/U-box 102 160 - -
Vium8474g00003 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Vium8474g00003 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Vium8474g00003 230 PANTHER ZINC FINGER, RING-CH-TYPE 15 228 - -
Vium8474g00003 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Vium8474g00003 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Vium8474g00003 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8474g00003 Vium-Chr8474 20053 23134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8474g00003 63 230 C3H Transcription Factor Family AT5G05830 58.580 7.16e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8474g00003 - - gmx:100808666 411.764