Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8474g00002 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTTGGTAGTGATGCGAGCGTTGAAGGGAGCTTATGCTTCTCTGATGCCGATGATGGGTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGATTGTGTTTCTGATCCTGAGGCTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGGTGATTTGGCTGCTGCTCACAAGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGTGA 456 0.4781 MATLQMSHVDLEQGNHRRSVVGSDASVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFDCVSDPEAGGVPHSGRASSVSECSVELETRTGVPEIKVHLAKVEKDCRICHMGLVSDSHESGAPIELGCSCKGDLAAAHKNCAEAWFKIKGNR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8474g00002 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 151 IPR013083 -
Vium8474g00002 151 Pfam RING-variant domain 105 148 IPR011016 GO:0008270
Vium8474g00002 151 ProSiteProfiles Zinc finger RING-CH-type profile. 97 151 IPR011016 GO:0008270
Vium8474g00002 151 SMART ringv_2 104 151 IPR011016 GO:0008270
Vium8474g00002 151 SUPERFAMILY RING/U-box 102 150 - -
Vium8474g00002 151 PANTHER ZINC FINGER, RING-CH-TYPE 15 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8474g00002 Vium-Chr8474 19358 19851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8474g00002 74 151 C3H Transcription Factor Family AT5G05830 65.385 1.31e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8474g00002 - - vum:124847035 317.39