Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8470g00005 ATGCCCTTTCTTAGAGGTTTTAGATTTAATCTCTTTTTGGTGTATCTCTTTGCTACTTGGGTTCAAATCCAAACCAAGGTGGAAAGTGACCAATACAAAGTTGGAGATCTAGATTCCTGGGGGATCCCCACTTCATCAAATTCACGAGTCTATGACAAATGGTCCAAATATCACAACCTCAAGATCGGTGATTCCCTCTTGTTTCTGTACCCACCAAGCCAAGATTCATTGATTCAAGTGACAGAGGAGTCCTACAACAGCTGCAACCTTAAAGATCCAATCTTGTACATGAACAATGGGAACTCGTTGTTCAACATTACATCAGTAGGGGAGTTTTACTTCACCAGTGCAGAGTTTGGTCATTGCCAAAAGCATCAAAAGCTTCACATAACTGTGGGAGTTGGAGGAAACACCGACACACTTTCTCCGTCTTCACTGCCTCAATCCGCAACTTCTTACCCAACTGCTTTTGGCGACATTCCCATGTCTCCTTCTAGTACCTCTTCACCTCACCCAAATTTCAATTTTTCACTCATAGTTATTGGGTTCTTCCTATGTGCTCTCTTCCCGACCCTATTAAGATAA 585 0.4239 MPFLRGFRFNLFLVYLFATWVQIQTKVESDQYKVGDLDSWGIPTSSNSRVYDKWSKYHNLKIGDSLLFLYPPSQDSLIQVTEESYNSCNLKDPILYMNNGNSLFNITSVGEFYFTSAEFGHCQKHQKLHITVGVGGNTDTLSPSSLPQSATSYPTAFGDIPMSPSSTSSPHPNFNFSLIVIGFFLCALFPTLLR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8470g00005 194 PANTHER BLUE COPPER PROTEIN 25 150 IPR039391 GO:0009055
Vium8470g00005 194 FunFam Early nodulin-like protein 1 29 137 - -
Vium8470g00005 194 Gene3D - 29 142 IPR008972 -
Vium8470g00005 194 SUPERFAMILY Cupredoxins 30 132 IPR008972 -
Vium8470g00005 194 Pfam Plastocyanin-like domain 49 125 IPR003245 GO:0009055
Vium8470g00005 194 ProSiteProfiles Phytocyanin domain profile. 30 134 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8470g00005 Vium-Chr8470 54569 55488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8470g00005 26 162 Phytocyanin Superfamily AT1G64640 62.319 1.21e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8470g00005 - - var:108342497 385.571