Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8470g00004 ATGGCCTCTTCCCACGTTACCGAGAAAGACCCCACCTCCAGATACGCGCGGTATGATGAAGTGCTGGGGAAAGGAGCCTTCAAGACTGTGTACAAAGCGTTTGACGAAGTGGATGGAATCGAGGTTGCATGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCAGCAGTTGGAGAAGTTGTACTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGCTGTACAATTATTGGATCGATGATACCACAGCCACTGTCAACATGATCACCGAGTTGTTCACCTCCGGGAGTTTGAGGCAGTACCGTAAGAAGCATAAGAATGTGGATATGAAAGCCATTAAGAACTGGGCACGGCAGATTCTCCGTGGCTTGTGTTTTCTGCACAGTCAGACTCCTCCTGTCATTCACAGGGATCTGAAATGTGACAATATTTTTGTCAATGGGAATAGTGGACTTGTTAAGATCGGAGATCTTGGATTGGCAATTGTTATGCAACAGCCTACTGCCCGTAGTGTCATCGGTACACCGGAGTTCATGGCCCCAGAGCTTTATGAGGAGGACTACGATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAGTACCCGTACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTTCCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTGAAGTGAAGCAATTCATAGAGAAATGTCTAGTTCCAGCATCAATGAGACTGTCGGCATGTGAACTACTCAAAGACCCATTCCTTGCGACTGAAAACGCAAAGGAGATCAATCCTGATATACTGCAGCTGCCTAATAGTCCTCATATCAAATTGATGAATCCACCAGTGTGCAAGCCTCATCCCATGGAGATAGATTTTAACTCCAGGCGTAGCTCACCAGGCTCGTCTGTGGGAAGAATTGAGGAAATTTCTCAGGTTTCAACTTTTGATCTTGTGAAGATGACTGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAATGCTGAAAGTACAATTTCACTTACACTGCGAATTGCAGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCTGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACACATGAAGATGTGTCTGTCATTGCAGAGCTAATACAAGATATGATTGTTAAGCTTGAGCCCAACTGGAAGCCTTTGTGTGAGAACCTCTCATCTGGGACAGATCATTACAGGGCCCCTTCAGAAGTTCAGAATGAACAGTTGAGCTGTGATTGGCCATTACAATCAAGTGATTACGATATGAAGACGATGTATGAAGATCTAGTTCGTCCGGGGCCTGTGGATGGAGTTTATCAGGAGAAGCAAGAATCTGTTATGTCAGATATATCAGCAGAGTGTGGGATTACGATTGCCTCAGATTCTAAAGATGTGGAACCCGACATTTTTATTTTTGATGAATTCTGGGAGGGGTTTGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGACAAGAGGATGGACAAAAGAATCATTCAGAAAACTCAGAAGGCTCTCTAATCAATTCATGTTGCAGCCCATCTAAAAACTTTGACATCTCAAGCACTGGTTCTCTTACTATAGTTGACAAAGACCCTTCAGACGACCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTCATGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAGAATGCAAAAAGGAGATGGATGACAAGGAAGAAGACACCGGTTACGTGA 1851 0.4403 MASSHVTEKDPTSRYARYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPQQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDTTATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPPVIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEDYDELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVSSGIKPAALAKVNDPEVKQFIEKCLVPASMRLSACELLKDPFLATENAKEINPDILQLPNSPHIKLMNPPVCKPHPMEIDFNSRRSSPGSSVGRIEEISQVSTFDLVKMTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTHEDVSVIAELIQDMIVKLEPNWKPLCENLSSGTDHYRAPSEVQNEQLSCDWPLQSSDYDMKTMYEDLVRPGPVDGVYQEKQESVMSDISAECGITIASDSKDVEPDIFIFDEFWEGFDVFNSNSDDRFSGQEDGQKNHSENSEGSLINSCCSPSKNFDISSTGSLTIVDKDPSDDLQLELEAIETQYQQCFHELVKMREEAIENAKRRWMTRKKTPVT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8470g00004 616 FunFam probable serine/threonine-protein kinase WNK9 99 278 - -
Vium8470g00004 616 CDD STKc_WNK 14 273 - -
Vium8470g00004 616 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Vium8470g00004 616 Gene3D - 355 445 - -
Vium8470g00004 616 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Vium8470g00004 616 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Vium8470g00004 616 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8470g00004 616 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8470g00004 616 Coils Coil 578 598 - -
Vium8470g00004 616 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8470g00004 616 SUPERFAMILY Protein kinase-like (PK-like) 18 309 IPR011009 -
Vium8470g00004 616 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 593 - -
Vium8470g00004 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vium8470g00004 616 MobiDBLite consensus disorder prediction 523 544 - -
Vium8470g00004 616 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 413 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8470g00004 Vium-Chr8470 37988 41645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8470g00004 1 615 MAP Kinase Kinase Kinase AT5G41990 51.707 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium8470g00004 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8470g00004 K08867 - gmx:100783717 988.023