Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00041 ATGTTTTCCAAAACTCCAACACCTGTTGTAATCGGAAGAGACAGCACCGTGATCGCAGTAAGCGGAGGTCGACATAGCAATGGTGCTGTCAAATGGGCTGTGGAACACCTCCTAAAGAAGAACTCCTCATGCATCCTTCTTCATGTTCGAACTAGGACCATGCTTAACCCTGATAATACTAATACTAATGATGCACCCAAAAGTGGTCGTCCACCAACTGAAGAAGAGTTGCACCAGTTCTTTCTTCCCTTTAGAGGATTTTGTGCCAGAAAAGGGATATCAACAAAGGAATTGGTCTTGCACGACCTTGATGTTACAAGTGCACTCATTGCTTTCGTTGATGACAATTGTATCAGCACCCTAGTTGTTGGTGCTGCTACTTCTTCCTGGGGTTCTATTCTAAGGAGATTTAATAAAGACGATGTGTCAGCCACTTTAGCAAAATCCTTACCTGATACATGCAGTTTATATGTTATATCAAAAGGAAAAGTACAGCATATTCGACCTTCAGGTCCTATAAAAGATATAGTCAATTTCTTAGAAAGTGATCCATTGGAGCAGCCACACAAAGATCTCAACATTAACCAAATAGCTTTTGAAGATATAGAGAGGAAACTAATCAAAGATGCAGTAAAACACCAATCTAATAATAAACTTTGGGAATATTTACGTGAAGAAACAGATTCACCAAAAGGTCCAATTGAGTACCCTCCATCACAAAATTCATCTGCAAATAATACTCCTGGAAATAGTGACAGCACGGGGCAATCACTTGGTCCTTCTTTGACAAATAGGTTAAATGAAAACCAAAAAATTGTTCTAAACGCACACCATTCTAGGACCAATTCACACCATTCTATTAGGAACATTTCACACCATTCTAGGACCAATTCACACCATTGTGGGAACAATTCTTACCATTGTGGGAACAATTCTTCTTTGAAAGATCAAGTAAACTTTGATATGCAGATGAGGAAATTGAAATTAGAACTACAAAAAACTGCAGAGATGTATGGTATGGCTTGCAAAGAAGCTGTTCTAGCTACACAAAAGGCAATGGAGATTGAAAAGTATAGACAAGAGAAGGAATGCGATATGGAGGAAGCAAAGCTTGCTCAATCCAAAATGACTATGGAGTCAACAGAAATGTCAAAACAACTGGTAAAAATGGGGTCTCAGAAGAGAAAGGAAGTCGAATTAAAAGCCAAAAATGAGGAAGAAGAGACGATTAAAGCATTTCAAGAAGCTCTATATAACAATATTCCCTACAGAAGATATACAATTGAAGATATTGATGCTGCAACCAATAAATTCGATAATGCTTTAAAAATTGGTGAAGGTGGATATGGTCCTGTCTTTAAAGGACTTCTTGATCACACTACTGTTGCTATTAAGGCTATGAAACCGGATTTAGCCTATGCAGAAAAACAATTTCAACAGGAGGTCATGGTTTTAAGCACCATAAGACATCCAAACATGGTGCTTCTCTTAGGAGCATGTCCAGAATTTGGTTGTCTTGTGTACGAGTATATGGTAAATGGAAGCTTAGAAGATCGTCTGCTTAAAAGAGATAACAGTCCTCCAATCCCATGGAAAACGCGTTTCAAAATAGCATCTGAGATTGCCACTGGCCTTCTTTTTCTTCATCAGACAAAGCCAGAACCCCTGGTGCATCGTGACTTGAAACCAGCAAACATTCTTTTAGACAAAAACTATGTTAGCAAGATTAGTGATGTTGGTTTGGCACGACTAGTGCCTCCTATAGTGGCTGATCAAACCACACAATATCGTTTAACTGGTGCAGCTGGAACATTTTGTTATATCGATCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACGTATATTCATTAGGAGTGGTGTTGCTACAAATCATTACAGGAAAATCTCCAATGGGGTTGTCACACTTGGTTGAGAAGGCTCTTCTGTCAAACACTTTAAGTGAGGTGCTTGATCCAAGTGTTACAAACTGGCCAATAGAAGCGACTTCATCATACGCTAAGTTGGCCTTAAAGTGTTGCGAGTTGAGAAAACGTGATAGACCAGACCTTGGTACTGTTGTTTTGCCAGAGTTAAACAGAATATCGAGGTTGTGGGACGATGAAAACATATATCCCCTCAGAAATTATCACATGGCTTGA 2169 0.3919 MFSKTPTPVVIGRDSTVIAVSGGRHSNGAVKWAVEHLLKKNSSCILLHVRTRTMLNPDNTNTNDAPKSGRPPTEEELHQFFLPFRGFCARKGISTKELVLHDLDVTSALIAFVDDNCISTLVVGAATSSWGSILRRFNKDDVSATLAKSLPDTCSLYVISKGKVQHIRPSGPIKDIVNFLESDPLEQPHKDLNINQIAFEDIERKLIKDAVKHQSNNKLWEYLREETDSPKGPIEYPPSQNSSANNTPGNSDSTGQSLGPSLTNRLNENQKIVLNAHHSRTNSHHSIRNISHHSRTNSHHCGNNSYHCGNNSSLKDQVNFDMQMRKLKLELQKTAEMYGMACKEAVLATQKAMEIEKYRQEKECDMEEAKLAQSKMTMESTEMSKQLVKMGSQKRKEVELKAKNEEEETIKAFQEALYNNIPYRRYTIEDIDAATNKFDNALKIGEGGYGPVFKGLLDHTTVAIKAMKPDLAYAEKQFQQEVMVLSTIRHPNMVLLLGACPEFGCLVYEYMVNGSLEDRLLKRDNSPPIPWKTRFKIASEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPIVADQTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDVYSLGVVLLQIITGKSPMGLSHLVEKALLSNTLSEVLDPSVTNWPIEATSSYAKLALKCCELRKRDRPDLGTVVLPELNRISRLWDDENIYPLRNYHMA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00041 722 Gene3D Phosphorylase Kinase; domain 1 418 510 - -
Vium846g00041 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
Vium846g00041 722 CDD STK_N 15 162 - -
Vium846g00041 722 FunFam Os07g0541700 protein 511 601 - -
Vium846g00041 722 SUPERFAMILY Protein kinase-like (PK-like) 417 697 IPR011009 -
Vium846g00041 722 Gene3D Transferase(Phosphotransferase) domain 1 511 713 - -
Vium846g00041 722 Coils Coil 355 375 - -
Vium846g00041 722 MobiDBLite consensus disorder prediction 226 263 - -
Vium846g00041 722 SMART serkin_6 438 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium846g00041 722 PANTHER OS02G0152300 PROTEIN 17 707 - -
Vium846g00041 722 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 151 - -
Vium846g00041 722 Pfam Protein tyrosine and serine/threonine kinase 443 696 IPR001245 GO:0004672|GO:0006468
Vium846g00041 722 Gene3D HUPs 15 151 IPR014729 -
Vium846g00041 722 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 411 510 - -
Vium846g00041 722 MobiDBLite consensus disorder prediction 234 263 - -
Vium846g00041 722 ProSiteProfiles Protein kinase domain profile. 438 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium846g00041 722 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00041 Vium-Chr846 306641 310000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00041 12 710 Receptor kinase-like Gene Family AT1G78940 42.231 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium846g00041 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00041 - - var:108320196 1397.88