Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00024 ATGGGGAATCAAAAGCAGAAGTGGACGCAGGACGAGGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAAAACATTCTCAAAGATCCCCAATTTGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAGCCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCTTCTTCTACCACCTCCACCACCACCACCGCCACACCTCAAAACGCGGCTTCTGCTCCACAAAACGTACCGTCTGATGTCACTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAGTGCCATTGTTAGTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGCGAAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAGGATGTCCCCTCGGGAACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCAGCACCGTCACAACCTGCACCACAACCACAATGGCAGTCCTCGGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAGGATGCTGCAGATACTGCAGCCTACAGAATTGCCGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAACATAGTGATTCGATGTTGGAGCTAGCAAAAGACATATATGAACAATGTTCTCGAGGTGAAATTATCCTTTTGGCTTAA 882 0.4535 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPSSTTSTTTTATPQNAASAPQNVPSDVTVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLSAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVPSGTKSPSPKPKDVRPAPSQPAPQPQWQSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLELAKDIYEQCSRGEIILLA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00024 293 MobiDBLite consensus disorder prediction 80 120 - -
Vium846g00024 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00024 293 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Vium846g00024 293 SUPERFAMILY "Winged helix" DNA-binding domain 121 201 IPR036390 -
Vium846g00024 293 CDD H15 123 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00024 293 FunFam Telomere repeat-binding factor 1 2 58 - -
Vium846g00024 293 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vium846g00024 293 MobiDBLite consensus disorder prediction 187 220 - -
Vium846g00024 293 Pfam linker histone H1 and H5 family 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00024 293 MobiDBLite consensus disorder prediction 53 122 - -
Vium846g00024 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Vium846g00024 293 SMART sant 4 59 IPR001005 -
Vium846g00024 293 FunFam Telomere repeat-binding factor 1 8 87 - -
Vium846g00024 293 Gene3D - 118 208 IPR036388 -
Vium846g00024 293 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00024 293 CDD SANT_TRF 6 56 - -
Vium846g00024 293 Gene3D - 2 58 - -
Vium846g00024 293 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vium846g00024 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00024 Vium-Chr846 110913 114288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00024 1 293 Single Myb Histone (SMH) Gene Family AT1G72740 48.123 8.49e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium846g00024 Linker_histone 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00024 K09422 - gmx:778177 438.343