Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00022 ATGGGGAATCAGAAGCAGAAGTGGACGCAAGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTCAATTCGCCCCTTTCCTCACTTCTCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGTCTCCAAAGACAAACCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCACCTCCAACTGCTGCCACCTCCTCCACCGCCACCGCTCCTCAAAACGCCCTCCCTGCTCCTCAAAACGCACGGACTGAGGTCGCTGCCCTTGATTCTTCTCCGAATGGTCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAGGATAATAATGGATCTGACCTAAGTGCCATTGTTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAGGATGTCGCCTCTGGTGCAAAATCACCTCCACCGAAACCAAAGGATGTCCGGCCACGGCAATTACAACCACAACCAGAACGGCAATCCCCAGCTTCTGTCATTACGGCATCTAATGATACAATAAAGGAAGCTGCTGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGTTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCGCGTGGTGAAATTATCCTCTTGGCTTAA 879 0.4619 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQVSKDKPRVPKLKALPPPPPPTAATSSTATAPQNALPAPQNARTEVAALDSSPNGQDVKNPPRYNAMVFEALSALKDNNGSDLSAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVASGAKSPPPKPKDVRPRQLQPQPERQSPASVITASNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00022 292 MobiDBLite consensus disorder prediction 88 121 - -
Vium846g00022 292 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Vium846g00022 292 CDD H15 124 210 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00022 292 FunFam Telomere repeat-binding factor 1 2 58 - -
Vium846g00022 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vium846g00022 292 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vium846g00022 292 SMART h15plus2 120 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00022 292 SUPERFAMILY "Winged helix" DNA-binding domain 122 202 IPR036390 -
Vium846g00022 292 Pfam linker histone H1 and H5 family 124 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00022 292 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Vium846g00022 292 MobiDBLite consensus disorder prediction 212 228 - -
Vium846g00022 292 MobiDBLite consensus disorder prediction 54 124 - -
Vium846g00022 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Vium846g00022 292 SMART sant 4 59 IPR001005 -
Vium846g00022 292 Gene3D - 2 58 - -
Vium846g00022 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 122 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium846g00022 292 MobiDBLite consensus disorder prediction 190 228 - -
Vium846g00022 292 FunFam Telomere repeat-binding factor 1 8 87 - -
Vium846g00022 292 CDD SANT_TRF 6 56 - -
Vium846g00022 292 Gene3D - 119 208 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00022 Vium-Chr846 105316 108274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00022 1 292 Single Myb Histone (SMH) Gene Family AT1G72740 49.658 1.04e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium846g00022 Linker_histone 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00022 K09422 - gmx:778177 412.92