Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00016 ATGGAAACTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAAATTGGCAGCGGATCCTTCGGAGAGATCTATCTCGGAACTAATTTTCAGACGAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTGAAAACCAAGCACCCTCAACTGTTGTATGAGTCGAAGCTGTATAAAATTCTGCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTACGGTGTTGAAGGAGAGTACAACGTGCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAACTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATCAAACCAGACAACTTCCTTATGGGTTTAGGAAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGACACCTCTACACATCAGCATATCCCATACAGAGAGAACAAGAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACTCATCTGGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAATACGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGCCGGTCACTGAGGTTTGATGACAAACCAGATTATGCTTATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAAGTGCCACTGCCCCTGCCCGTGCTATTGGTCCTGCTGCTGGACCAAGTTCAGGCGTGCCACCACTAGCGGCAAATACTGATGGACAGTTAGGTGGAGAGGATGGTAGGCATAATAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACCCTGTACCTTTTGCTAATGATGGCGTGTTATCGAGACAAAAGGGCCCAGTTACATATGACTCAACTCAATCTAAAGATGTTATGTTGTCAAGCTCTAATTTTTTCCGGCCAAGTGGATCTGCAAGGCGAGGGGCTGTCTCAGGCAGCCGAGAATCCCGTGATGTAGTTGTTGGCAGTGAGACTGAGGCTTCTCGTCCTCTAACTCTGGATTCAAGTCAGGGAGCACTTCGTAAAATGTCTGTTCCTGGTGCTCAGAGAAGTTCAGCAATCACGTCTTCTGAGCACAACCGTACATCCTCTGGCAGAAACACATCGAATATAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTACATTTCAATGAAGAGAGGGTACATTATTAG 1437 0.4315 METRVGNKFRLGRKIGSGSFGEIYLGTNFQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQSATAPARAIGPAAGPSSGVPPLAANTDGQLGGEDGRHNNWSSSDPTRRRNPVPFANDGVLSRQKGPVTYDSTQSKDVMLSSSNFFRPSGSARRGAVSGSRESRDVVVGSETEASRPLTLDSSQGALRKMSVPGAQRSSAITSSEHNRTSSGRNTSNIKNLETTLRGIESLHFNEERVHY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00016 478 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium846g00016 478 MobiDBLite consensus disorder prediction 364 387 - -
Vium846g00016 478 MobiDBLite consensus disorder prediction 334 348 - -
Vium846g00016 478 FunFam Casein kinase I isoform delta-like 1 308 - -
Vium846g00016 478 PANTHER CASEIN KINASE-RELATED 8 407 - -
Vium846g00016 478 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium846g00016 478 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium846g00016 478 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium846g00016 478 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Vium846g00016 478 MobiDBLite consensus disorder prediction 433 456 - -
Vium846g00016 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium846g00016 478 FunFam Putative Casein kinase I 1 85 - -
Vium846g00016 478 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium846g00016 478 MobiDBLite consensus disorder prediction 306 414 - -
Vium846g00016 478 MobiDBLite consensus disorder prediction 430 456 - -
Vium846g00016 478 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00016 Vium-Chr846 78395 82917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00016 11 281 MAP Kinase Kinase Kinase AT5G50180 26.644 1.57e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium846g00016 Pkinase 7.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00016 K02218 - gmx:100787808 858.211