Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00013 ATGACACGGGGGAGGATAAGGGCGAGGCTCCGGAGGAGCAATCTTTACACATTTGGTTGCCTTAAGCCTTCTACTATTGAGGATGCACCTCATCCACTTCAAGGTCCCGGGTTCTCGCGTACTGTGTACTGCAATCAGCCTCTTCTTCATGAAAGGAAGCCTCTATATTACTGCAGGAATGATATATCCACGACTAAGTACAATGTTCTTACGTTTGTCCCCAAGGCACTCTTTGAACAATTCCGTAGGGTTGCTAATATATACTTCCTTTTGGCTGCGTGTCTCTCGGCCTCTCCAATTTCACCTTTCAGCCCACTCAGCATGATTGCTCCTTTGGCATTTGTTGTAGGGCTCAGTATGGCAAAGGAAGCATTGGAAGATTCTCGTAGGTTCGTTCAGGATGTCAAAGTTAATCGCCGAAAGGTTAATCGTCATAAAAGCGATGGTAGTTTTGGTCCCAGGTCGTGGCAGACCATTATGGTTGGGGATGTAGTAAAAGTGCAAAAGGATCAATTTTTTCCAGCTGATTTGCTTCTGTTGTCATCGAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACAAACTTGAAGGTGAAACGATCTTTGGAGTCTACCTTGAATCTAGACAATGACGAAGTTTTTAAAGATTTCACTGGAACAATACGTTGTGAAGACCCAAACCCGAATCTTTATACATTTGTTGGAAACTTAGAGTATGAGCGCCAGATTTATCCTCTTGATCCTAATCAAATTCTTCTCCGAGATTCTAAGCTCAGGAACACTGAGTACATCTATGGGGTGGCCATTTTCACTGGTCATGACAGCAAAGTCATGCAAAATTCTACAAAATCTCCTTCCAAACGAAGCACAATAGAAAAGAAGATGGATTATATTATATACACCCTCTTCACTGTCCTTATTTTGATATCTGTTATTAGTTCCATAGGATTTGTCATCAAGACTAAGTACCAAACCCCAAGTTGGTGGTATTTACGGCCGGACAATATAGAATACCAGTATGATCCCAAGAAAGTTGGAGTAGCTGGAATGAGTCATTTGATTACTGCGCTCATTCTTTATGGATATTTGATACCCATTTCACTTTATGTTTCCATCGAGGTTGTAAAGGTTTTACAGGCTACCTTCATCAACCAAGACATTCAAATGTATGATGACGATACTGGAACTCCAGCTGATGCACGGACATCAAATTTGAATGAAGAATTGGGTCAGGTAGATACTATCTTGTCAGATAAAACTGGAACTTTGACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTGCGCCCCAGTGATGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATATTGAGGAACCTGATTCAGATCTCTCCAATTTTCCCCTGCCTAAGGCTAAAGTGCGAGTTTCATGGGATGATGTTAAAAAAGATGAAGAAATTGGACTGGAGGCTGTTGTCACTTCCAAAGGAGACGAGGATCAAAAGCATGCCATAAAGGGATTTGGTTTTGAAGATGACCGTCTCATGAATTGTAATTGGTTGAAAGAGCCCAATGCTGACGACCTTTTGATGTTCTTCCGAATCCTAGCAGTTTGCCACACCGCCATTCCCGAGCTGAATGAGGAGACTGGTGTTTATACATATGAAGCCGAGTCACCCGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGCAGAAGGACTCAATCAAGTATTTTTGTTCGTGAAAAGTTTTCTGCTTCTAGACAAGTGGTTGAAAGAGAGTACAAACTTTTGAATCTGCTGGATTTTACTAGTAAAAGAAAACGTATGTCAGTGATCGTGCGTGATGAGGAGGGCAGTGTCTTTCTTATGTGCAAAGGGGCTGACAGTATCATATTTGATCGCATGTCAAAGAATGGAAAAAAGTATTTAGAGGCTACTACCAAGCATCTAAATGATTACGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCTTATAGAAAGCTTGAGGAACAAGAATACTCGGCTTGGAATAATGAATTTCAGAAAGCCAAAGCATCTGTTGGAGCTGAAAGAGATTCAATGCTTGAGCGAGTATCAGATATGATGGAAAAAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTTCCCCAATGTATTGATAATCTTGCTCAAGCTGGTCTTAAGATCTGGGTGTTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTACTCCGGTCACAGATTCTGTAACCACTGATGTCAAACAGTTCTTTTGTTTAACACCCCAGGCCATCAAGGATAACATTTCGAACCAACTCACCAATGCTTCCCAAATGATAAAACTGGAGAAGGATCCTCATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTGACATATACTTTAGAAGATGATATGAAGCACCAATTTTTGGCATTGGCAGTTGATTGTGCATCTGTCATCTGTTGTCGTGTGTCTCCCAAGCAAAAGGCACTGGTAACAAGGTTAGTGAAACAAGGTACTAGAAAGACTACTTTAGCAATAGGTGATGGCGCAAATGATGTTGGGATGATTCAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTGGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTGCGATTGCCCAATTTCGATTTCTAGAGAGGCTTCTGGTAGTCCATGGACATTGGTGTTACAAGAGAATCGCACAAATGATATGTTATTTCTTCTACAAGAATATTGCATTTGGCCTCACCATCTTCTATTTTGAGGCTTTCACAGGCTTCTCTGGTCAATCAGTTTATGATGACTGGTATATGATATTGTTCAATGTTGTTCTGACATCATTACCTGTTATTTCACTCGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAACAAGGACCCAGGAATTTATTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATTCTTCACTCATCATCTTCTTTCTCGTCGTCACCATCTTCTATGACCAAGCATTTCGTGGTGATGGCCAGGTAGCTGACATGGCTGTTGTTGGAACCACTATGTTCACTTGCATCGTCTGTACTGTCAACTGTCAGATTGCGTTGACAATGAGCCACTTTACATGGATTCAGCACCTGTTTGTATGGGGAAGCATATCCACTTGGTACATCTTTCTAATATTGTATGGAATGCTTACTCCAGAATATTCCAAGAGTGCCTACCAAATATTGGCTGAAGCTCTTGGTCCTGCGCCTAATTATTGGATAGCAACCATTTTAGTTACTGTTACTTGTAATCTTCCTTATTTTGTCCACATTTCCTACCAAAGATGTTTTTATCCCATGGATCATCACATTATCCAAGAAATTAAGTACTACAAAAAGGATATTGAAGACCAACACATGTGGACAAGGGAGCGTTCTAAAGCCAGACAGGAAACCAAGATTGGTTTCACCGCAAGAGTGGAAGCAAAGATCAGGCAACTGAAGGGAAGGCTGCAGAAGAAGCAATCTTCCATGACTATTACAGCCCCATCGTGA 3696 0.4159 MTRGRIRARLRRSNLYTFGCLKPSTIEDAPHPLQGPGFSRTVYCNQPLLHERKPLYYCRNDISTTKYNVLTFVPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNRHKSDGSFGPRSWQTIMVGDVVKVQKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLNLDNDEVFKDFTGTIRCEDPNPNLYTFVGNLEYERQIYPLDPNQILLRDSKLRNTEYIYGVAIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFVIKTKYQTPSWWYLRPDNIEYQYDPKKVGVAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDDDTGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRPSDVELAAAKQMASDIEEPDSDLSNFPLPKAKVRVSWDDVKKDEEIGLEAVVTSKGDEDQKHAIKGFGFEDDRLMNCNWLKEPNADDLLMFFRILAVCHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFVREKFSASRQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGSVFLMCKGADSIIFDRMSKNGKKYLEATTKHLNDYGEAGLRTLALAYRKLEEQEYSAWNNEFQKAKASVGAERDSMLERVSDMMEKELILVGATAVEDKLQKGVPQCIDNLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITTPVTDSVTTDVKQFFCLTPQAIKDNISNQLTNASQMIKLEKDPHAAFALIIDGKTLTYTLEDDMKHQFLALAVDCASVICCRVSPKQKALVTRLVKQGTRKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLIIFFLVVTIFYDQAFRGDGQVADMAVVGTTMFTCIVCTVNCQIALTMSHFTWIQHLFVWGSISTWYIFLILYGMLTPEYSKSAYQILAEALGPAPNYWIATILVTVTCNLPYFVHISYQRCFYPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQSSMTITAPS 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00013 1231 NCBIfam HAD-IC family P-type ATPase 858 969 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium846g00013 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Vium846g00013 1231 Gene3D - 720 928 IPR023214 -
Vium846g00013 1231 SFLD Haloacid Dehalogenase 405 939 - -
Vium846g00013 1231 CDD P-type_ATPase_APLT_Dnf-like 59 1048 - -
Vium846g00013 1231 FunFam Phospholipid-transporting ATPase 118 288 - -
Vium846g00013 1231 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Vium846g00013 1231 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Vium846g00013 1231 PRINTS P-type cation-transporting ATPase superfamily signature 888 907 - -
Vium846g00013 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1190 - -
Vium846g00013 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 916 1166 IPR032630 -
Vium846g00013 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1165 IPR023298 -
Vium846g00013 1231 Pfam Cation transport ATPase (P-type) 546 651 - -
Vium846g00013 1231 SUPERFAMILY HAD-like 417 943 IPR036412 -
Vium846g00013 1231 NCBIfam phospholipid-translocating P-type ATPase 57 1174 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium846g00013 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Vium846g00013 1231 FunFam Phospholipid-transporting ATPase 724 928 - -
Vium846g00013 1231 FunFam Phospholipid-transporting ATPase 591 722 - -
Vium846g00013 1231 SFLD p-type atpase 405 939 IPR044492 -
Vium846g00013 1231 Gene3D - 113 288 - -
Vium846g00013 1231 Gene3D - 589 701 IPR023299 GO:0000166
Vium846g00013 1231 SUPERFAMILY Calcium ATPase, transduction domain A 146 286 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00013 Vium-Chr846 69816 77220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00013 1 1226 Primary Pumps ATPases AT1G17500 74.165 0.0 1917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00013 K01530 - gmx:100784621 2295.78