Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00011 ATGAGTTACTCCACGAAAAAGCACGACGTGTTCGTGAGCTTCAGAGGGGAGGACACACGAACCAACTTCACTAGCCATCTTTACAAAGCTCTCGAAGATAAATCAATCGGAGCTTACATAGATCGCCAGCTAGACAGAGGAGAAAGTGTCTGGCCGGCACTTGCCAAAGCAATTCGGGACTCACATGTCTCAATTGTTGTTTTCTCTGAAAACTATGCTTGTTCCAAATGGTGTCTGGAAGAGCTGGTGAAAATTCTTGAATGCAGAAAAGAACTGGGTTTGGTAGTTATACCTGTCTTTTACAACATAGATCCATCAGACATAAGGAATCAGAAGGGTACTTACGAGAAGGCATTGGCAGAACTGTTGGAATCCGATGAAGAGAAAGGGCCAAAGTGGAAAGCTTCTCTCACTGAAGCAGCCAATATATCTGGATGGGACTCTAGGACACATAGGGACGAAGCTCATGTCATTGAGAATGTTGTCAATGATGTATTGCAAAAGCTTCATCTGCGATGCCCTACTGAATTAAAGGGCCCTGTTGAAAATGAAGAAAATTGCAGAAATGTAGAATTATTACTAAAATCATGTAGGGTCATTGGAATTTGGGGTATGGGTGGAATTGGCAAGTCCACCATTGCTAAAATCTTGTTTGCTAAACACTTTCCCCAATATGACCATGTCTGCTTTGTGACCAATGCAAAAGAATATTCGCTAGACAAGCTTTTCTCTACCATATTGAAGGAGGAGGTTTCCGCAAAAAATGTCGTAGGGTCATCGTTTCATATGAGGAGACTCAGAAGTAAAAAGGTTTTCATTGTACTTGATGATGTTGACATGGATAGTTTTGAGCCATTGGAGTATTTATGTGGGGTGTATGAAGGCCAGCATAGTGATAGTAAACTCGTTATAACAACAAGAGATAGGCAATTGCTTGTTGGAAGGGTTGATGCGATATACGAGGTTCAGAAATGGAAGAAAACAGAATCTCTGAAGCTTTTTTGCTCAGAATCCTTTAAGAAAAGTTATCCCGAAGGAGGTTATGAGAGTCTCTCAGAAAGTGCAGTTGAATATGCTGGTGGCGTTCCATTTGCCCTTAAAGTTTTGGGTTCATATCTTCGTTCAAAAGGTATCAGTTTTTGGGAAAGTACTATAAGAAAACTCAGCTTGTATCCTAACGAGAGAATTCAGAAAGTGTTGGAAATGAGCTACACTGGATTGCATGATCTAGAAAAAAATATTTTTCTAGACATTGTATTTTTCTTTAGAGAAAAACAGGAAGATCATGCCACACGGATACTAGATGCCTGTGGTTTTGAAGCAACTAGTGGAATAGAAGTTCTCGCAGACAAATCTTTGTTAACAATTTCATACACAAATATAATACAAATGCACGACTTGCTGCAACAAATGGGTTTGGAGATTGTACGTCAAGAATGTAGAGCAGATCCTGGCAGACGTAGTCGCTTGAAGGATAATGAAGCTCGTGAAGTGATTGAAGAAAACAAGGGAACTGAAGCAATTCAAGGAATAGAACTGGATTTGTCTCAAGTTAAAAATTTACGTTTGCGTTCTGACACATTGACGAAGATGAAAGCCTTAAGATTTCTGAGATTCTATAACTCCTCTGGTCAGAGTTCTTGGAATACATACCTCGACCTTCCTGCAACTCTTGAGCCGTTTTCTGATAAACTAAGGTACACTGAGTGGATTGGATACCCTTTTGAGTGTCTTCCATCACCTTTTTGTGCAAAGTTTCTTGTTGAGATTCACATGCAACATGGCAAAGTTAAACAACTTTGGCAGGGAATCCAGGAACTAGATAACTTAGAGGGAATTGACCTAAGTGGATGCAAACAGTTTGAAGAGCTTCCAGATTTGTCTAAGGCGCCAAGACTTAAATGGGTGAATCTCTCATGTTGTGAAAGTTTGCGGTATCTTCACCCGTCTGTTTTATCCTCGGCCACGCTTGTTACTTTGATACTGAATGGGTGTACAAAACTCGAGAGTGTTAAAGGTGAAAAGCGTTTAAAATCTCTAGAGAAGATCAGTGTCAATGGCTGCTTAAGTCTGGAGGAATTTGCAGTGTCATTAGATTTAATTAAAATATTGAATGTGAGCAATGCACCAGTAAGGCGAATGGGAAAACTCAAGAGCCTCAATTTAGAGGAGTTTCCAAGATCCCTTCGTCGTTGGTTGGAACTTGTCAAGACTACGGTGAGCCACCACCTCAAACATTCGTACGTGCTAAAGTTAGATCAATACGATGGGACAACGTTGCCTGAATTCATTAAGAATTCCGAAAACTTGAGAATTTTGTCCGTGGAGAATTGTGACTTGTTGATGCATCTTCAAAAGCTTCCATCCAGCATCGGTTACTTAGGTGTCATTAACTGCACTTCACTGGTGTCAGTGTCAGACTTAGTCAATTTGGCAAATGTGATGCGGGGAAGTACCAGATTCATTACATTCAAGAACTGCTTGAAATTGGATGAACATTCATGCAGACTTATAATGAAGAGCGTAAAGTTAATAATGGTGTGTTCTGCATTTGACAACCTGGTGAGAAAATCCTGTGACGTCCGCGACTACAGTTATAACAGTGTTGAGCTTTGTTTGCCAGGAAGAAAGGTCCCACAAGAGATTAAATATCGGAGCACCGAGTCCTTCATTACCATTGACCTTCCCAAACTTTCCAACTTGAGGGGCTTCATTTACTCTGTTGTTCTTTCTCCATCTGGTGAAATGAAGAAGCATGACACCAAGATTATATGTAAACGCCACTTGAGACAAAATACGAGGGAATCATGGGTATATAGTGATATCGAGGGCTTGAACACCGATCATGTTTATATATGGTATGATCCATTCCACAGTGATGGCATTCTCAAATATAATGAGCCAAGTGTTTCTTTTGAGTTCTGTGTTAGAAATGATAAGGGGGAAGTTGATGGCTCTATGTTTATTAAAGAGTGTGGTGTTGGCCTTATAAGTGTTTCAGAACTGCCGAGTGTTTTAGAAGAGTTGGACTGGCACTCGGATAAGAAGAAGGACTTAGTGAATAGAGTGGAGTTGATTACAGGACAAAGGATAACCTTAACATCAATTGAACAATCCGATGAGAGGAAAAACCATTTTTCTGCTTTGGAAGAGATTATCAATTCTACTCACAAGGAAGCCAAAACTGATTCTGGCACAGATTATGGGCAGAATACTACAAAATCTACTGATGCGTTTGTGCAGGTCAAATATGAAGGAAATAGAGAAACGTCAATCAAACAAGATGCAACATTGCCTGAAACTGTTGAATCGGAGTTAGACAAAGAACATGAATCTAAAGAAAAGTCAAAGTCAGACTCAGAGATTGTTAAACCAGTTTCAGCTGAAAATGGTAAATCTACTCACAAGGAAACCAAAACTAATTCTGGAACAAGTGTGGTCAAATACAAAGGTAATAAAGAAGTGCCAAAATCAGATGCAACATTGCATGAGACCATGGAGTCACATTCAGACAATGAAAATCAGTTTAGAGAAAAGTCAGTCACACAATCAGAGGTAGTAGAGATGATTGAGCTAGAGAACACTGAATCTACTTGCAAGGAAACCCTGAGCATTGCTGGAAGAGGTCCCAAAGAAAAATCTAGAGAGTCTACAAAAATTGTGGCCGATGAACATTTACAGAGCACATCTCTTCAAGCCTCTTCCCAGGGGGGCTCTGAGCACTTGCATGATAGGTTAGAAGAATCGAATAAGCAAGTTGTACAAACTTATGATACAGAGAAATTTGTTACTAAATACTCGTACTTTGACCTTGAGAGTTGCCTCCAACAGTTGCATGAAAATCCATTTGCAATCCTTGACTTACTCTCTAATGAGCTATCCCCTCCTCTGAAACAATCAGAAACTTGTGTTCAAAAGGTAGCTCAAGCAAATGATGCTACAACCGTCCTCGATGAATTCCGAACCTTAGTGTTCTCAACTTCATTGCTAGACAAACTTCCAGACCAATCCTATCGGCAACAAATTGAAGAATCACTACGAAAACTTCACGCTTATCGTAGAGAAATTACGAAAGAGCAAGAAGGTGTAGACAAATTTATCGAGCTATACGATAAAGCTGCCAACATTTCTCAAGAAAAGATGCTAACCGAGGATAAACAAATAAAACTGGCATCTAAGAAGAGAGACTTGTATAACAAACTTCAAGATTCTAAACTGAAAGTTCAACAGTTTGACACTGCCATCTCAACTAGTAAGTCTGAGATTGAAAACCTCCAAAAGAGACAGAGAGAAATCCAGGGAGCTATAAATAAGCTTCAACAAGAAAATGAAGCCTTGGAAAAGGAGAGGTCAGCACAAGAGGTTTTATACTCAGAAAAACAAACCAAGAAGGACGAAACACTTGAATTGGTGAAGTATATGTCGACTTCTGTTGTTTACACAATCAAACAATTAGAAGAACTTGAAGAGAAAAGATTGAGTTTGGCTTTAGCTTACGAAGACCTCAAAGAGCCATATGGAATAATGAAGACAAAGCCCCCATTTTAG 4548 0.3967 MSYSTKKHDVFVSFRGEDTRTNFTSHLYKALEDKSIGAYIDRQLDRGESVWPALAKAIRDSHVSIVVFSENYACSKWCLEELVKILECRKELGLVVIPVFYNIDPSDIRNQKGTYEKALAELLESDEEKGPKWKASLTEAANISGWDSRTHRDEAHVIENVVNDVLQKLHLRCPTELKGPVENEENCRNVELLLKSCRVIGIWGMGGIGKSTIAKILFAKHFPQYDHVCFVTNAKEYSLDKLFSTILKEEVSAKNVVGSSFHMRRLRSKKVFIVLDDVDMDSFEPLEYLCGVYEGQHSDSKLVITTRDRQLLVGRVDAIYEVQKWKKTESLKLFCSESFKKSYPEGGYESLSESAVEYAGGVPFALKVLGSYLRSKGISFWESTIRKLSLYPNERIQKVLEMSYTGLHDLEKNIFLDIVFFFREKQEDHATRILDACGFEATSGIEVLADKSLLTISYTNIIQMHDLLQQMGLEIVRQECRADPGRRSRLKDNEAREVIEENKGTEAIQGIELDLSQVKNLRLRSDTLTKMKALRFLRFYNSSGQSSWNTYLDLPATLEPFSDKLRYTEWIGYPFECLPSPFCAKFLVEIHMQHGKVKQLWQGIQELDNLEGIDLSGCKQFEELPDLSKAPRLKWVNLSCCESLRYLHPSVLSSATLVTLILNGCTKLESVKGEKRLKSLEKISVNGCLSLEEFAVSLDLIKILNVSNAPVRRMGKLKSLNLEEFPRSLRRWLELVKTTVSHHLKHSYVLKLDQYDGTTLPEFIKNSENLRILSVENCDLLMHLQKLPSSIGYLGVINCTSLVSVSDLVNLANVMRGSTRFITFKNCLKLDEHSCRLIMKSVKLIMVCSAFDNLVRKSCDVRDYSYNSVELCLPGRKVPQEIKYRSTESFITIDLPKLSNLRGFIYSVVLSPSGEMKKHDTKIICKRHLRQNTRESWVYSDIEGLNTDHVYIWYDPFHSDGILKYNEPSVSFEFCVRNDKGEVDGSMFIKECGVGLISVSELPSVLEELDWHSDKKKDLVNRVELITGQRITLTSIEQSDERKNHFSALEEIINSTHKEAKTDSGTDYGQNTTKSTDAFVQVKYEGNRETSIKQDATLPETVESELDKEHESKEKSKSDSEIVKPVSAENGKSTHKETKTNSGTSVVKYKGNKEVPKSDATLHETMESHSDNENQFREKSVTQSEVVEMIELENTESTCKETLSIAGRGPKEKSRESTKIVADEHLQSTSLQASSQGGSEHLHDRLEESNKQVVQTYDTEKFVTKYSYFDLESCLQQLHENPFAILDLLSNELSPPLKQSETCVQKVAQANDATTVLDEFRTLVFSTSLLDKLPDQSYRQQIEESLRKLHAYRREITKEQEGVDKFIELYDKAANISQEKMLTEDKQIKLASKKRDLYNKLQDSKLKVQQFDTAISTSKSEIENLQKRQREIQGAINKLQQENEALEKERSAQEVLYSEKQTKKDETLELVKYMSTSVVYTIKQLEELEEKRLSLALAYEDLKEPYGIMKTKPPF 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00011 1515 MobiDBLite consensus disorder prediction 1100 1122 - -
Vium846g00011 1515 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 818 IPR044974 GO:0006952
Vium846g00011 1515 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 146 IPR035897 -
Vium846g00011 1515 Gene3D - 167 317 IPR027417 -
Vium846g00011 1515 MobiDBLite consensus disorder prediction 1228 1250 - -
Vium846g00011 1515 SUPERFAMILY "Winged helix" DNA-binding domain 395 481 IPR036390 -
Vium846g00011 1515 Gene3D Ribonuclease Inhibitor 477 710 IPR032675 -
Vium846g00011 1515 SMART till_3 7 143 IPR000157 GO:0007165
Vium846g00011 1515 Gene3D - 2 166 IPR035897 -
Vium846g00011 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 418 IPR027417 -
Vium846g00011 1515 PRINTS Disease resistance protein signature 265 279 - -
Vium846g00011 1515 PRINTS Disease resistance protein signature 359 373 - -
Vium846g00011 1515 PRINTS Disease resistance protein signature 605 621 - -
Vium846g00011 1515 PRINTS Disease resistance protein signature 199 214 - -
Vium846g00011 1515 Gene3D - 325 408 IPR042197 -
Vium846g00011 1515 Pfam TIR domain 7 172 IPR000157 GO:0007165
Vium846g00011 1515 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 171 - -
Vium846g00011 1515 MobiDBLite consensus disorder prediction 1088 1155 - -
Vium846g00011 1515 Pfam NB-ARC domain 198 399 IPR002182 GO:0043531
Vium846g00011 1515 Coils Coil 1408 1456 - -
Vium846g00011 1515 SUPERFAMILY L domain-like 479 806 - -
Vium846g00011 1515 ProSiteProfiles TIR domain profile. 6 169 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00011 Vium-Chr846 53158 61206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00011 4 798 WRKY Transcription Factor Family AT4G12020 30.266 4.02e-77 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00011 - - vun:114166184 2301.55