Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00010 ATGAGTTACTCCACGAAAAAGCACGACGTGTTCGTGAGCTTCAGAGGGGAGGACACACGAACCAACTTCACTAGCCATCTTTACAAAGCTCTCGAAGATAAATCAATCGGAGCTTACATAGATCGCCAGCTAGACAGAGGAGAAAGTGTCTGGCCGGCACTTGCCAAAGCAATTCGGGACTCACATGTCTCAATTGTTGTTTTCTCTGAAAACTATGCTTGTTCCAAATGGTGTCTGGAAGAGCTGGTGAAAATTCTTGAATGCAGAAAAGAACTGGGTTTGGTAGTTATACCTGTCTTTTACAACATAGATCCATCAGACATAAGGAATCAGAAGGGTACTTACGAGAAGGCATTGGCAGAACTGTTGGAATCCGATGAAGAGAAAGGGCCAAAGTGGAAAGCTTCTCTCACTGAAGCAGCCAATATATCTGGATGGGACTCTAGGACACATAGGGACGAAGCTCATGTCATTGAGAATGTTGTCAATGATGTATTGCAAAAGCTTCATCTGCGATGCCCTACTGAATTAAAGGGCCCTGTTGAAAATGAAGAAAATTGCAGAAATGTAGAATTATTACTAAAATCATGTAGGGTCATTGGAATTTGGGGTATGGGTGGAATTGGCAAGTCCACCATTGCTAAAATCTTGTTTGCTAAACACTTTCCCCAATATGACCATGTCTGCTTTGTGACCAATGCAAAAGAATATTCGCTAGACAAGCTTTTCTCTACCATATTGAAGGAGGAGGTTTCCGCAAAAAATGTCGTAGGGTCATCGTTTCATATGAGGAGACTCAGAAGTAAAAAGGTTTTCATTGTACTTGATGATGTTGACATGGATAGTTTTGAGCCATTGGAGTATTTATGTGGGGTGTATGAAGGCCAGCATAGTGATAGTAAACTCGTTATAACAACAAGAGATAGGCAATTGCTTGTTGGAAGGGTTGATGCGATATACGAGGTTCAGAAATGGAAGAAAACAGAATCTCTGAAGCTTTTTTGCTCAGAATCCTTTAAGAAAAGTTATCCCGAAGGAGGTTATGAGAGTCTCTCAGAAAGTGCAGTTGAATATGCTGGTGGCGTTCCATTTGCCCTTAAAGTTTTGGGTTCATATCTTCGTTCAAAAGGTATCAGTTTTTGGGAAAGTACTATAAGAAAACTCAGCTTGTATCCTAACGAGAGAATTCAGAAAGTGTTGGAAATGAGCTACACTGGATTGCATGATCTAGAAAAAAATATTTTTCTAGACATTGTATTTTTCTTTAGAGAAAAACAGGAAGATCATGCCACACGGATACTAGATGCCTGTGGTTTTGAAGCAACTAGTGGAATAGAAGTTCTCGCAGACAAATCTTTGTTAACAATTTCATACACAAATATAATACAAATGCACGACTTGCTGCAACAAATGGGTTTGGAGATTGTACGTCAAGAATGTAGAGCAGATCCTGGCAGACGTAGTCGCTTGAAGGATAATGAAGCTCGTGAAGTGATTGAAGAAAACAAGGGAACTGAAGCAATTCAAGGAATAGAACTGGATTTGTCTCAAGTTAAAAATTTACGTTTGCGTTCTGACACATTGACGAAGATGAAAGCCTTAAGATTTCTGAGATTCTATAACTCCTCTGGTCAGAGTTCTTGGAATACATACCTCGACCTTCCTGCAACTCTTGAGCCGTTTTCTGATAAACTAAGGTACACTGAGTGGATTGGATACCCTTTTGAGTGTCTTCCATCACCTTTTTGTGCAAAGTTTCTTGTTGAGATTCACATGCAACATGGCAAAGTTAAACAACTTTGGCAGGGAATCCAGGAACTAGATAACTTAGAGGGAATTGACCTAAGTGGATGCAAACAGTTTGAAGAGCTTCCAGATTTGTCTAAGGCGCCAAGACTTAAATGGGTGAATCTCTCATGTTGTGAAAGTTTGCGGTATCTTCACCCGTCTGTTTTATCCTCGGCCACGCTTGTTACTTTGATACTGAATGGGTGTACAAAACTCGAGAGTGTTAAAGGTGAAAAGCGTTTAAAATCTCTAGAGAAGATCAGTGTCAATGGCTGCTTAAGTCTGGAGGAATTTGCAGTGTCATTAGATTTAATTAAAATATTGAATGTGAGCAATGCACCAGTAAGGCGAATGGGAAAACTCAAGAGCCTCAATTTAGAGGAGTTTCCAAGATCCCTTCGTCGTTGGTTGGAACTTGTCAAGACTACGGTGAGCCACCACCTCAAACATTCGTACGTGCTAAAGTTAGATCAATACGATGGGACAACGTTGCCTGAATTCATTAAGAATTCCGAAAACTTGAGAATTTTGTCCGTGGAGAATTGTGACTTGTTGATGCATCTTCAAAAGCTTCCATCCAGCATCGGTTACTTAGGTGTCATTAACTGCACTTCACTGGTGTCAGTGTCAGACTTAGTCAATTTGGCAAATGTGATGCGGGGAAGTACCAGATTCATTACATTCAAGAACTGCTTGAAATTGGATGAACATTCATGCAGACTTATAATGAAGAGCGTAAAGTTAATAATGGTGTGTTCTGCATTTGACAACCTGGTGAGAAAATCCTGTGACGTCCGCGACTACAGTTATAACAGTGTTGAGCTTTGTTTGCCAGGAAGAAAGGTCCCACAAGAGATTAAATATCGGAGCACCGAGTCCTTCATTACCATTGACCTTCCCAAACTTTCCAACTTGAGGGGCTTCATTTACTCTGTTGTTCTTTCTCCATCTGGTGAAATGAAGAAGCATGACACCAAGATTATATGTAAACGCCACTTGAGACAAAATACGAGGGAATCATGGGTATATAGTGATATCGAGGGCTTGAACACCGATCATGTTTATATATGGTATGATCCATTCCACAGTGATGGCATTCTCAAATATAATGAGCCAAGTGTTTCTTTTGAGTTCTGTGTTAGAAATGATAAGGGGGAAGTTGATGGCTCTATGTTTATTAAAGAGTGTGGTGTTGGCCTTATAAGTGTTTCAGAACTGCCGAGTGTTTTAGAAGAGTTGGACTGGCACTCGGATAAGAAGAAGGACTTAGTGAATAGAGTGGAGTTGATTACAGGACAAAGGATAACCTTAACATCAATTGAACAATCCGATGAGAGGAAAAACCATTTTTCTGCTTTGGAAGAGATTATCAATTCTACTCACAAGGAAGCCAAAACTGATTCTGGCACAGATTATGGGCAGAATACTACAAAATCTACTGATGCGGTCAAATATGAAGGAAATAGAGAAACGTCAATCAAACAAGATGCAACATTGCCTGAAACTGTTGAATCGGAGTTAGACAAAGAACATGAATCTAAAGAAAAGTCAAAGTCAGACTCAGAGATTGTTAAACCAGTTTCAGCTGAAAATGGTAAATCTACTCACAAGGAAACCAAAACTAATTCTGGAACAAGTGTGGTCAAATACAAAGGTAATAAAGAAGTGCCAAAATCAGATGCAACATTGCATGAGACCATGGAGTCACATTCAGACAATGAAAATCAGTTTAGAGAAAAGTCAGTCACACAATCAGAGGTAGTAGAGATGATTGAGCTAGAGAACACTGAATCTACTTGCAAGGAAACCCTGAGCATTGCTGGAAGAGGTCCCAAAGAAAAATCTAGAGAGTCTACAAAAATTGTGGCCGATGAACATTTACAGAGCACATCTCTTCAAGCCTCTTCCCAGGGGGGCTCTGAGCACTTGCATGATAGGTTAGAAGAATCGAATAAGCAAGTTGTACAAACTTATGATACAGAGAAATTTGTTACTAAATACTCGTACTTTGACCTTGAGAGTTGCCTCCAACAGTTGCATGAAAATCCATTTGCAATCCTTGACTTACTCTCTAATGAGCTATCCCCTCCTCTGAAACAATCAGAAACTTGTGTTCAAAAGGTAGCTCAAGCAAATGATGCTACAACCGTCCTCGATGAATTCCGAACCTTAGTGTTCTCAACTTCATTGCTAGACAAACTTCCAGACCAATCCTATCGGCAACAAATTGAAGAATCACTACGAAAACTTCACGCTTATCGTAGAGAAATTACGAAAGAGCAAGAAGGTGTAGACAAATTTATCGAGCTATACGATAAAGCTGCCAACATTTCTCAAGAAAAGATGCTAACCGAGGATAAACAAATAAAACTGGCATCTAAGAAGAGAGACTTGTATAACAAACTTCAAGATTCTAAACTGAAAGTTCAACAGTTTGACACTGCCATCTCAACTAGTAAGTCTGAGATTGAAAACCTCCAAAAGAGACAGAGAGAAATCCAGGGAGCTATAAATAAGCTTCAACAAGAAAATGAAGCCTTGGAAAAGGAGAGGTCAGCACAAGAGGTTTTATACTCAGAAAAACAAACCAAGAAGGACGAAACACTTGAATTGGTGAAGTATATGTCGACTTCTGTTGTTTACACAATCAAACAATTAGAAGAACTTGAAGAGAAAAGATTGAGTTTGGCTTTAGCTTACGAAGACCTCAAAGAGCCATATGGAATAATGAAGACAAAGCCCCCATTTTAG 4539 0.3966 MSYSTKKHDVFVSFRGEDTRTNFTSHLYKALEDKSIGAYIDRQLDRGESVWPALAKAIRDSHVSIVVFSENYACSKWCLEELVKILECRKELGLVVIPVFYNIDPSDIRNQKGTYEKALAELLESDEEKGPKWKASLTEAANISGWDSRTHRDEAHVIENVVNDVLQKLHLRCPTELKGPVENEENCRNVELLLKSCRVIGIWGMGGIGKSTIAKILFAKHFPQYDHVCFVTNAKEYSLDKLFSTILKEEVSAKNVVGSSFHMRRLRSKKVFIVLDDVDMDSFEPLEYLCGVYEGQHSDSKLVITTRDRQLLVGRVDAIYEVQKWKKTESLKLFCSESFKKSYPEGGYESLSESAVEYAGGVPFALKVLGSYLRSKGISFWESTIRKLSLYPNERIQKVLEMSYTGLHDLEKNIFLDIVFFFREKQEDHATRILDACGFEATSGIEVLADKSLLTISYTNIIQMHDLLQQMGLEIVRQECRADPGRRSRLKDNEAREVIEENKGTEAIQGIELDLSQVKNLRLRSDTLTKMKALRFLRFYNSSGQSSWNTYLDLPATLEPFSDKLRYTEWIGYPFECLPSPFCAKFLVEIHMQHGKVKQLWQGIQELDNLEGIDLSGCKQFEELPDLSKAPRLKWVNLSCCESLRYLHPSVLSSATLVTLILNGCTKLESVKGEKRLKSLEKISVNGCLSLEEFAVSLDLIKILNVSNAPVRRMGKLKSLNLEEFPRSLRRWLELVKTTVSHHLKHSYVLKLDQYDGTTLPEFIKNSENLRILSVENCDLLMHLQKLPSSIGYLGVINCTSLVSVSDLVNLANVMRGSTRFITFKNCLKLDEHSCRLIMKSVKLIMVCSAFDNLVRKSCDVRDYSYNSVELCLPGRKVPQEIKYRSTESFITIDLPKLSNLRGFIYSVVLSPSGEMKKHDTKIICKRHLRQNTRESWVYSDIEGLNTDHVYIWYDPFHSDGILKYNEPSVSFEFCVRNDKGEVDGSMFIKECGVGLISVSELPSVLEELDWHSDKKKDLVNRVELITGQRITLTSIEQSDERKNHFSALEEIINSTHKEAKTDSGTDYGQNTTKSTDAVKYEGNRETSIKQDATLPETVESELDKEHESKEKSKSDSEIVKPVSAENGKSTHKETKTNSGTSVVKYKGNKEVPKSDATLHETMESHSDNENQFREKSVTQSEVVEMIELENTESTCKETLSIAGRGPKEKSRESTKIVADEHLQSTSLQASSQGGSEHLHDRLEESNKQVVQTYDTEKFVTKYSYFDLESCLQQLHENPFAILDLLSNELSPPLKQSETCVQKVAQANDATTVLDEFRTLVFSTSLLDKLPDQSYRQQIEESLRKLHAYRREITKEQEGVDKFIELYDKAANISQEKMLTEDKQIKLASKKRDLYNKLQDSKLKVQQFDTAISTSKSEIENLQKRQREIQGAINKLQQENEALEKERSAQEVLYSEKQTKKDETLELVKYMSTSVVYTIKQLEELEEKRLSLALAYEDLKEPYGIMKTKPPF 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00010 1512 MobiDBLite consensus disorder prediction 1225 1247 - -
Vium846g00010 1512 Coils Coil 1405 1453 - -
Vium846g00010 1512 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 146 IPR035897 -
Vium846g00010 1512 Gene3D - 167 317 IPR027417 -
Vium846g00010 1512 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 818 IPR044974 GO:0006952
Vium846g00010 1512 SUPERFAMILY "Winged helix" DNA-binding domain 395 481 IPR036390 -
Vium846g00010 1512 PRINTS Disease resistance protein signature 605 621 - -
Vium846g00010 1512 PRINTS Disease resistance protein signature 265 279 - -
Vium846g00010 1512 PRINTS Disease resistance protein signature 359 373 - -
Vium846g00010 1512 PRINTS Disease resistance protein signature 199 214 - -
Vium846g00010 1512 SMART till_3 7 143 IPR000157 GO:0007165
Vium846g00010 1512 MobiDBLite consensus disorder prediction 1097 1119 - -
Vium846g00010 1512 Gene3D - 2 166 IPR035897 -
Vium846g00010 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 418 IPR027417 -
Vium846g00010 1512 Gene3D - 325 408 IPR042197 -
Vium846g00010 1512 MobiDBLite consensus disorder prediction 1057 1152 - -
Vium846g00010 1512 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 171 - -
Vium846g00010 1512 Gene3D Ribonuclease Inhibitor 477 710 IPR032675 -
Vium846g00010 1512 Pfam NB-ARC domain 198 399 IPR002182 GO:0043531
Vium846g00010 1512 Pfam TIR domain 7 172 IPR000157 GO:0007165
Vium846g00010 1512 SUPERFAMILY L domain-like 479 806 - -
Vium846g00010 1512 ProSiteProfiles TIR domain profile. 6 169 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00010 Vium-Chr846 53158 61206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00010 4 798 WRKY Transcription Factor Family AT4G12020 30.266 4.07e-77 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00010 - - vun:114166184 2305.79