Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium846g00002 ATGGGTGGTTCTGGGAGATGGCTTAAGTCGCTCATTTCTCTCAGGAAGCCCTCCGCAACTGATCAAGAGAAGGGTGGTGACAAGAGTAAGAGAAAGTGGAAGTTATGGAGGGGCACTTCAGAAGGGTTTGGGATTGGATCGTCCATGCAGAAGGGGCAGAGTGGTGGTGGGTCCTTTGTGGTGGATGATGGGGCATTTGCTGCTGCTTTGGCTGCTGTGGTAAGAACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATACAGGCAGTGTTTCGTGGTTTCTTGGCAAGACGAGCTTTTAGGGCCCTGAGAGCAGTGGTGAGGTTGCAAGCTATATTTCGTGGTTGGCAAGTGAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGGGGAAAGCTGTCAGTGAGCCCTGCAATGAAGCTGACCCTGTTCAGCAAGCTGAGCAAGGATGGTGTAACATTCCAGGAACTGCGGAAGAAGTTAAGGCAAAATTACAGATGAGGCTGGAAGGAGCAGTTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAAGCAGAAATCAACAGTGAGTGCTAGTCCAAACTCAAAAGGTGCTAGGGCAGTGATTCCTCCTCTCAAGCACCGCAGTCTAGATAGTAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGGCTGCTAAACCATGGGAGAGCAGGTCGATGGTAGACATGTATTTGGACTCATCTGACATGACTCCAGCAGTTACTAGTAAAAGTGATCATTTTGTTCTTCCCTTGAATTCTGATCAACAAAATTGCTCAGTCAAAGCAAGAAGGAATGTTGTGACAACCAGGATTTCATCTAAGTCACTTACGACTAGTCAATCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATGCACATCTGAATCACCACCTGTGCCATCTACCAACAATGTTATAGTGGACACAACAGAGGAAGGAAATGTTTGTAAACCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCTAAGAGAATTTTTATGGATGATTGTGTGTCACTTAGCGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCTAATATGTGGAAGAATATCTATGCAACACCTTTAAGGACACGTTATCAAAAGCAATATACAATGGAAGATAAGTAG 1293 0.454 MGGSGRWLKSLISLRKPSATDQEKGGDKSKRKWKLWRGTSEGFGIGSSMQKGQSGGGSFVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRAFRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGKAVSEPCNEADPVQQAEQGWCNIPGTAEEVKAKLQMRLEGAVKRDRTKAYSQSKQKSTVSASPNSKGARAVIPPLKHRSLDSKSSGWGMLDRWMAAKPWESRSMVDMYLDSSDMTPAVTSKSDHFVLPLNSDQQNCSVKARRNVVTTRISSKSLTTSQSTPSSSSISSECMYDDSPLSTSCTSESPPVPSTNNVIVDTTEEGNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLSGVTRSSSGSYPSANMWKNIYATPLRTRYQKQYTMEDK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium846g00002 430 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Vium846g00002 430 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Vium846g00002 430 MobiDBLite consensus disorder prediction 300 322 - -
Vium846g00002 430 Gene3D - 84 137 - -
Vium846g00002 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 128 IPR027417 -
Vium846g00002 430 MobiDBLite consensus disorder prediction 194 220 - -
Vium846g00002 430 SMART iq_5 85 107 IPR000048 GO:0005515
Vium846g00002 430 SMART iq_5 108 129 IPR000048 GO:0005515
Vium846g00002 430 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Vium846g00002 430 PANTHER IQ-DOMAIN 5-RELATED 1 405 - -
Vium846g00002 430 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium846g00002 Vium-Chr846 15144 18324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium846g00002 1 413 IQD Protein Family AT1G72670 42.759 2.55e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium846g00002 - - vun:114166337 745.732